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contig_metadata

20 rows where analysis = "diamond", bioproject = "PRJNA340009" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA340009 · 20 ✖

analysis 1

  • diamond · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8045396 8045396 PRJNA340009_P_NODE_37647_length_206_cov_4.515924_g37340_i0 PRJNA340009 37647 206 4.515924 9.30280344 Meles meles 9662 Chordata Chordata 62.4 2.73e-9   NR XP_045881491.1 9662 g37340 i0 63.4 1.19417475728155 41 15 59.7 0 79 201 171 211 XP_045881491.1 LOW QUALITY PROTEIN: uncharacterized protein LOC123954405 [Meles meles] diamond 246 62.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Meles Meles meles
26807150 26807150 PRJNA340009_P_NODE_14681_length_309_cov_1.111538_g14374_i0 PRJNA340009 14681 309 1.111538 3.43465242 Opisthokonta 33154 Chordata Chordata 48.5 6.07e-4   NR XP_006880946.1 28737 g14374 i0 52.8 3.7378640776699 53 23 51.5 2 292 134 211 261 XP_006880946.1 PREDICTED: sepiapterin reductase [Elephantulus edwardii] diamond 1155 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Macroscelidea Macroscelididae Elephantulus Elephantulus edwardii
27787086 27787086 PRJNA340009_P_NODE_77284_length_161_cov_0.910714_g76977_i0 PRJNA340009 77284 161 0.910714 1.46624954 Chondrichthyes 7777 Chordata Chordata 43.5 0.00655   NR XP_067859951.1 212740 g76977 i0 48.5 1.84472049689441 33 17 61.5 0 154 56 194 226 XP_067859951.1 cytokine receptor-like factor 3 [Heptranchias perlo] diamond 297 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Hexanchiformes Hexanchidae Heptranchias Heptranchias perlo
28211526 28211526 PRJNA340009_P_NODE_67606_length_165_cov_0.879310_g67299_i0 PRJNA340009 67606 165 0.87931 1.4508615 Manis javanica 9974 Chordata Chordata 47.8 1.69e-4   NR KAI5936292.1 9974 g67299 i0 62.9 2.61818181818182 35 13 63.6 0 157 53 133 167 KAI5936292.1 LINE-1 retrotransposable element ORF2 protein [Manis javanica] diamond 432 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis javanica
28274738 28274738 PRJNA340009_P_NODE_37686_length_206_cov_3.273885_g37379_i0 PRJNA340009 37686 206 3.273885 6.7442031 Branchiostoma floridae 7739 Chordata Chordata 43.5 0.00929   NR XP_035673168.1 7739 g37379 i0 41.7 0.524271844660194 36 21 52.4 0 196 89 112 147 XP_035673168.1 ADP-ribosylation factor-like [Branchiostoma floridae] diamond 108 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
28685499 28685499 PRJNA340009_P_NODE_37367_length_207_cov_1.544304_g37060_i0 PRJNA340009 37367 207 1.544304 3.19670928 Phyllostomus discolor 89673 Chordata Chordata 65.1 7.04e-11   NR KAF6084338.1 89673 g37060 i0 63.3 0.710144927536232 49 18 71 0 51 197 71 119 KAF6084338.1 hypothetical protein HJG60_008609 [Phyllostomus discolor] diamond 147 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor
29790217 29790217 PRJNA340009_P_NODE_45351_length_190_cov_44.113475_g45044_i0 PRJNA340009 45351 190 44.113475 83.8156025 Heterocephalus glaber 10181 Chordata Chordata 82 1.33e-17   NR EHB13068.1 10181 g45044 i0 88.4 12.3315789473684 43 5 67.9 0 19 147 114 156 EHB13068.1 60S ribosomal protein L23a [Heterocephalus glaber] diamond 2343 82 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Bathyergidae Heterocephalus Heterocephalus glaber
30232698 30232698 PRJNA340009_P_NODE_75112_length_161_cov_27.017857_g74805_i0 PRJNA340009 75112 161 27.017857 43.49874977 Branchiostoma floridae 7739 Chordata Chordata 40.8 0.0488   NR XP_035674994.1 7739 g74805 i0 82.4 0.316770186335404 17 3 31.7 0 2 52 174 190 XP_035674994.1 tubulin alpha-1 chain-like [Branchiostoma floridae] diamond 51 40.8 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
30296358 30296358 PRJNA340009_P_NODE_73252_length_162_cov_1.787611_g72945_i0 PRJNA340009 73252 162 1.787611 2.89592982 Staurois parvus 386267 Chordata Chordata 42.4 0.00477   NR CAI9547784.1 386267 g72945 i0 42.9 0.907407407407407 49 28 90.7 0 149 3 26 74 CAI9547784.1 unnamed protein product, partial [Staurois parvus] diamond 147 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30327955 30327955 PRJNA340009_P_NODE_28092_length_233_cov_4.266304_g27785_i0 PRJNA340009 28092 233 4.266304 9.94048832 Ovis canadensis 37174 Chordata Chordata 44.3 0.00939   NR XP_069414236.1 37174 g27785 i0 53.6 0.721030042918455 56 19 64.4 3 60 209 77 131 XP_069414236.1 aldehyde dehydrogenase, mitochondrial [Ovis canadensis] diamond 168 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis canadensis
30548582 30548582 PRJNA340009_P_NODE_20153_length_269_cov_1.854545_g19846_i0 PRJNA340009 20153 269 1.854545 4.98872605 Eschrichtius robustus 9764 Chordata Chordata 85.1 2.93e-19   NR KAJ8781220.1 9764 g19846 i0 66.1 0.62453531598513 56 19 62.5 0 178 11 23 78 KAJ8781220.1 hypothetical protein J1605_011204 [Eschrichtius robustus] diamond 168 85.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
31008243 31008243 PRJNA340009_P_NODE_26654_length_239_cov_1.473684_g26347_i0 PRJNA340009 26654 239 1.473684 3.52210476 Metazoa 33208 Chordata Chordata 87 8.97e-18   NR XP_042313078.1 8520 g26347 i0 70.7 9.46443514644352 58 17 72.8 0 12 185 618 675 XP_042313078.1 prolyl endopeptidase [Sceloporus undulatus] diamond 2262 87.4 0.995423340961098 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Phrynosomatidae Sceloporus Sceloporus undulatus
31781326 31781326 PRJNA340009_P_NODE_42977_length_195_cov_2.027397_g42670_i0 PRJNA340009 42977 195 2.027397 3.95342415 Haliaeetus albicilla 8969 Chordata Chordata 44.3 0.00561   NR XP_069659176.1 8969 g42670 i0 42.3 0.8 52 27 75.4 2 11 157 48 99 XP_069659176.1 uncharacterized protein [Haliaeetus albicilla] diamond 156 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Accipitriformes Accipitridae Haliaeetus Haliaeetus albicilla
31813150 31813150 PRJNA340009_P_NODE_80197_length_153_cov_4.903846_g79890_i0 PRJNA340009 80197 153 4.903846 7.50288438 Chrysemys picta bellii 8478 Chordata Chordata 42.4 0.014   NR XP_005313184.2 8478 g79890 i0 53.8 0.764705882352941 39 17 74.5 1 143 30 30 68 XP_005313184.2 BET1-like protein [Chrysemys picta bellii] diamond 117 42.4 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Emydidae Chrysemys Chrysemys picta
31844615 31844615 PRJNA340009_P_NODE_30417_length_226_cov_1.056497_g30110_i0 PRJNA340009 30417 226 1.056497 2.38768322 Staurois parvus 386267 Chordata Chordata 44.7 3.83e-4   NR CAI9622433.1 386267 g30110 i0 81.8 0.292035398230089 22 4 29.2 0 12 77 11 32 CAI9622433.1 unnamed protein product, partial [Staurois parvus] diamond 66 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
31971256 31971256 PRJNA340009_P_NODE_44798_length_191_cov_43.091549_g44491_i0 PRJNA340009 44798 191 43.091549 82.30485859 Teratoscincus roborowskii 102174 Chordata Chordata 49.7 6.41e-5   NR AIY32697.1 102174 g44491 i0 58.7 0.722513089005236 46 19 72.3 0 46 183 2 47 AIY32697.1 NADH dehydrogenase subunit 1 [Teratoscincus roborowskii] diamond 138 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Sphaerodactylidae Teratoscincus Teratoscincus roborowskii
32002946 32002946 PRJNA340009_P_NODE_18038_length_282_cov_3.304721_g17731_i0 PRJNA340009 18038 282 3.304721 9.31931322 Petromyzon marinus 7757 Chordata Chordata 43.9 0.0136   NR XP_032815660.1 7757 g17731 i0 31.8 0.702127659574468 66 44 70.2 1 8 205 29 93 XP_032815660.1 nucleoside diphosphate kinase 6 [Petromyzon marinus] diamond 198 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
32698250 32698250 PRJNA340009_P_NODE_29660_length_228_cov_2.279330_g29353_i0 PRJNA340009 29660 228 2.27933 5.1968724 Rhinolophus ferrumequinum 59479 Chordata Chordata 60.1 2.3e-8   NR ACC62065.1 59479 g29353 i0 64.6 1.26315789473684 48 17 63.2 0 35 178 287 334 ACC62065.1 hypothetical protein [Rhinolophus ferrumequinum] diamond 288 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Rhinolophidae Rhinolophus Rhinolophus ferrumequinum
32824352 32824352 PRJNA340009_P_NODE_38120_length_205_cov_3.403846_g37813_i0 PRJNA340009 38120 205 3.403846 6.9778843 Erpetoichthys calabaricus 27687 Chordata Chordata 98.2 2.36e-22   NR XP_028681576.2 27687 g37813 i0 78.1 3.74634146341463 64 14 93.7 0 2 193 62 125 XP_028681576.2 piggyBac transposable element-derived protein 4-like [Erpetoichthys calabaricus] diamond 768 99 0.991919191919192 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
32887138 32887138 PRJNA340009_P_NODE_42720_length_196_cov_0.884354_g42413_i0 PRJNA340009 42720 196 0.884354 1.73333384 Staurois parvus 386267 Chordata Chordata 50.1 7.71e-6   NR CAI9618505.1 386267 g42413 i0 52.6 1.16326530612245 38 18 58.2 0 5 118 14 51 CAI9618505.1 unnamed protein product, partial [Staurois parvus] diamond 228 50.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;