RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA340009" and tax_phylum = "Candidatus Lindowiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Lindowiibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1666944 1666944 PRJNA340009_P_NODE_54942_length_176_cov_1.606299_g54635_i0 PRJNA340009 54942 176 1.606299 2.82708624 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 1817870 Bacteria Bacteria 91.3 1.08e-19   NR OGH61054.1 1817870 g54635 i0 70.7 0.988636363636364 58 17 98.9 0 174 1 111 168 OGH61054.1 MAG: glycerol kinase [Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27] diamond 174 91.3 1 Bacteria Bacteria candidate phyla   Candidatus Lindowiibacteriota         Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27
29428516 29428516 PRJNA340009_P_NODE_45589_length_190_cov_2.170213_g45282_i0 PRJNA340009 45589 190 2.170213 4.1234047 Bacteria 2 Bacteria Bacteria 102 3.61e-24   NR OGH55723.1 1817870 g45282 i0 77.8 1.97368421052632 63 14 99.5 0 189 1 14 76 OGH55723.1 MAG: hypothetical protein A3G34_01490 [Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27] diamond 375 102 1 Bacteria Bacteria candidate phyla   Candidatus Lindowiibacteriota         Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27
31876253 31876253 PRJNA340009_P_NODE_53417_length_178_cov_2.100775_g53110_i0 PRJNA340009 53417 178 2.100775 3.7393795 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 1817870 Bacteria Bacteria 92 5.94e-20   NR OGH56892.1 1817870 g53110 i0 73.3 1.01123595505618 60 15 99.4 1 177 1 214 273 OGH56892.1 MAG: hypothetical protein A3G34_06960 [Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27] diamond 180 92 1 Bacteria Bacteria candidate phyla   Candidatus Lindowiibacteriota         Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;