RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA340009" and tax_phylum = "Candidatus Collieribacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Collieribacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28116885 28116885 PRJNA340009_P_NODE_56645_length_173_cov_39.645161_g56338_i0 PRJNA340009 56645 173 39.645161 68.58612853 Candidatus Collierbacteria bacterium RIFOXYB2_FULL_46_14 1817729 Bacteria Bacteria 45.4 0.00161   NR OGD73379.1 1817729 g56338 i0 46.9 0.84971098265896 49 26 85 0 16 162 8 56 OGD73379.1 MAG: hypothetical protein A3K29_04605 [Candidatus Collierbacteria bacterium RIFOXYB2_FULL_46_14] diamond 147 45.4 1 Bacteria Bacteria candidate phyla   Candidatus Collieribacteriota         Candidatus Collierbacteria bacterium RIFOXYB2_FULL_46_14
30611707 30611707 PRJNA340009_P_NODE_69013_length_164_cov_0.886957_g68706_i0 PRJNA340009 69013 164 0.886957 1.45460948 Candidatus Collierbacteria bacterium GW2 2053540 Bacteria Bacteria 53.5 1.93e-6   NR KKT72160.1 1618384 g68706 i0 52.8 1.92073170731707 53 23 97 1 5 163 172 222 KKT72160.1 MAG: hypothetical protein UW68_C0046G0008 [Candidatus Collierbacteria bacterium GW2011_GWB1_44_6] diamond 315 53.5 1 Bacteria Bacteria candidate phyla   Candidatus Collieribacteriota         Candidatus Collierbacteria bacterium GW2011_GWB1_44_6

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;