RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA340009" and tax_phylum = "Candidatus Campbelliibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Campbelliibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27327633 27327633 PRJNA340009_P_NODE_19523_length_272_cov_71.937220_g19216_i0 PRJNA340009 19523 272 71.93722 195.6692384 Candidatus Campbellbacteria bacterium 2026716 Bacteria Bacteria 71.2 2.89e-12   NR QQR82496.1 2026716 g19216 i0 93.9 0.363970588235294 33 2 36.4 0 267 169 273 305 QQR82496.1 MAG: tyrosine-type recombinase/integrase [Candidatus Campbellbacteria bacterium] diamond 99 71.2 1 Bacteria Bacteria candidate phyla   Candidatus Campbelliibacteriota         Candidatus Campbellbacteria bacterium
28165835 28165835 PRJNA340009_P_NODE_30925_length_224_cov_2.205714_g30618_i0 PRJNA340009 30925 224 2.205714 4.94079936 Bacteria 2 Bacteria Bacteria 89.4 1.44e-19   NR AKM83895.1 1618633 g30618 i0 57.8 2.54464285714286 64 27 85.7 0 24 215 107 170 AKM83895.1 MAG: transcriptional regulator TrmB [Candidatus Campbellbacteria bacterium GW2011_OD1_34_28] diamond 570 89.4 1 Bacteria Bacteria candidate phyla   Candidatus Campbelliibacteriota         Candidatus Campbellbacteria bacterium GW2011_OD1_34_28
30534216 30534216 PRJNA340009_P_NODE_56453_length_174_cov_1.584000_g56146_i0 PRJNA340009 56453 174 1.584 2.75616 Bacteria 2 Bacteria Bacteria 87.4 3.5e-20   NR AKM83996.1 1618633 g56146 i0 85.4 4.13793103448276 48 7 82.8 0 7 150 98 145 AKM83996.1 MAG: Dam-replacing [Candidatus Campbellbacteria bacterium GW2011_OD1_34_28] diamond 720 87.4 1 Bacteria Bacteria candidate phyla   Candidatus Campbelliibacteriota         Candidatus Campbellbacteria bacterium GW2011_OD1_34_28

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;