RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA340009" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
392044 392044 PRJNA340009_P_NODE_24381_length_248_cov_2.216080_g24074_i0 PRJNA340009 24381 248 2.21608 5.4958784 Streptobacillus 34104 Bacteria Bacteria 142 4.62e-40   NR WP_064580919.1 34105 g24074 i0 84.1 3.96774193548387 82 13 99.2 0 248 3 70 151 WP_064580919.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD [Streptobacillus moniliformis] diamond 984 142 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Streptobacillus Streptobacillus moniliformis
27439898 27439898 PRJNA340009_P_NODE_48743_length_185_cov_2.977941_g48436_i0 PRJNA340009 48743 185 2.977941 5.50919085 Bacteria 2 Bacteria Bacteria 126 3.2399999999999997e-35   NR MBM6691316.1 850 g48436 i0 98.4 1.97837837837838 61 1 98.9 0 2 184 84 144 MBM6691316.1 hypothetical protein [Fusobacterium mortiferum] diamond 366 127 0.992125984251969 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium mortiferum
31749701 31749701 PRJNA340009_P_NODE_45737_length_190_cov_1.446809_g45430_i0 PRJNA340009 45737 190 1.446809 2.7489371 Fusobacteriota bacterium 2060921 Bacteria Bacteria 96.3 8.990000000000001e-22   NR NLK62094.1 2060921 g45430 i0 82.5 0.9 57 10 90 0 5 175 79 135 NLK62094.1 DegT/DnrJ/EryC1/StrS family aminotransferase [Fusobacteriota bacterium] diamond 171 96.3 1 Bacteria   Fusobacteriati Fusobacteriota         Fusobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;