RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA340009" and tax_clade = "SAR202 cluster"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • SAR202 cluster · 2 ✖

bioproject 1

  • PRJNA340009 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27976286 27976286 PRJNA340009_P_NODE_54465_length_177_cov_1.132812_g54158_i0 PRJNA340009 54465 177 1.132812 2.00507724 Bacillati 1783272 Bacteria Bacteria 49.3 5.26e-6   NR MBM3945672.1 2030829 g54158 i0 53.3 5.44067796610169 45 21 76.3 0 40 174 1 45 MBM3945672.1 SDR family NAD(P)-dependent oxidoreductase [SAR202 cluster bacterium] diamond 963 49.7 0.991951710261569 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium
30074550 30074550 PRJNA340009_P_NODE_61752_length_167_cov_1.406780_g61445_i0 PRJNA340009 61752 167 1.40678 2.3493226 SAR2 1926611 Bacteria Bacteria 73.9 8.45e-14   NR PKB64394.1 1926611 g61445 i0 58.2 0.988023952095808 55 23 98.8 0 2 166 131 185 PKB64394.1 MAG: hypothetical protein BZY80_03095 [SAR202 cluster bacterium Io17-Chloro-G2] diamond 165 73.9 1 Bacteria SAR202 cluster Bacillati Chloroflexota Dehalococcoidia       SAR202 cluster bacterium Io17-Chloro-G2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;