RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA340009" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 16 ✖

bioproject 1

  • PRJNA340009 · 16 ✖

analysis 1

  • diamond · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18243635 18243635 PRJNA340009_P_NODE_28435_length_232_cov_2.704918_g28128_i0 PRJNA340009 28435 232 2.704918 6.27540976 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 66.6 1.14e-10   NR XP_004356655.1 1257118 g28128 i0 63.2 0.737068965517241 57 21 73.7 0 32 202 327 383 XP_004356655.1 uncharacterized protein ACA1_174150 [Acanthamoeba castellanii str. Neff] diamond 171 66.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19517674 19517674 PRJNA340009_P_NODE_12496_length_330_cov_2.822064_g12189_i0 PRJNA340009 12496 330 2.822064 9.3128112 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 100 7.750000000000001e-22   NR XP_636821.1 352472 g12189 i0 59.7 0.7 77 31 70 0 321 91 634 710 XP_636821.1 threonyl-tRNA synthetase [Dictyostelium discoideum AX4] diamond 231 100 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
27706925 27706925 PRJNA340009_P_NODE_22084_length_258_cov_43.267943_g21777_i0 PRJNA340009 22084 258 43.267943 111.63129294 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 55.1 1.98e-6   NR KAH3765306.1 1580589 g21777 i0 57.5 0.465116279069767 40 17 46.5 0 14 133 584 623 KAH3765306.1 hypothetical protein Pelo_2830 [Pelomyxa schiedti] diamond 120 55.1 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
27895860 27895860 PRJNA340009_P_NODE_49425_length_184_cov_2.755556_g49118_i0 PRJNA340009 49425 184 2.755556 5.07022304 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 103 4.729999999999999e-24   NR PRP73176.1 1890364 g49118 i0 70.5 1.98913043478261 61 18 99.5 0 2 184 149 209 PRP73176.1 u3 small nucleolar RNA-interacting protein 2-like [Planoprotostelium fungivorum] diamond 366 103 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28464458 28464458 PRJNA340009_P_NODE_76166_length_161_cov_0.910714_g75859_i0 PRJNA340009 76166 161 0.910714 1.46624954 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 80.1 8.21e-16   NR PRP81845.1 1890364 g75859 i0 70 0.93167701863354 50 15 93.2 0 152 3 824 873 PRP81845.1 P-type ATPase [Planoprotostelium fungivorum] diamond 150 80.1 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28860297 28860297 PRJNA340009_P_NODE_30288_length_226_cov_1.988701_g29981_i0 PRJNA340009 30288 226 1.988701 4.49446426 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.9 0.00968   NR KAH3756887.1 1580589 g29981 i0 72 2.04424778761062 25 7 33.2 0 214 140 135 159 KAH3756887.1 meiosis protein [Pelomyxa schiedti] diamond 462 43.9 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29474417 29474417 PRJNA340009_P_NODE_76770_length_161_cov_0.910714_g76463_i0 PRJNA340009 76770 161 0.910714 1.46624954 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47 3.9e-4   NR XP_004336759.1 1257118 g76463 i0 48.9 0.875776397515528 47 24 87.6 0 16 156 33 79 XP_004336759.1 peptidase family M3 protein, partial [Acanthamoeba castellanii str. Neff] diamond 141 47 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30169340 30169340 PRJNA340009_P_NODE_43932_length_193_cov_2.833333_g43625_i0 PRJNA340009 43932 193 2.833333 5.46833269 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 53.5 3.03e-6   NR PRP83212.1 1890364 g43625 i0 45.1 0.792746113989637 51 27 77.7 1 44 193 357 407 PRP83212.1 ras-related protein Rab-11B-like [Planoprotostelium fungivorum] diamond 153 53.5 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
31102855 31102855 PRJNA340009_P_NODE_4695_length_492_cov_4.103837_g4391_i0 PRJNA340009 4695 492 4.103837 20.19087804 Entamoeba 5758 Evosea other_Eukaryota 50.4 9.94e-4   NR XP_656595.2 294381 g4391 i0 34.6 3.20731707317073 78 50 47.6 1 162 395 1243 1319 XP_656595.2 protein kinase, putative [Entamoeba histolytica HM-1:IMSS] diamond 1578 50.4 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
31338618 31338618 PRJNA340009_P_NODE_71816_length_163_cov_0.894737_g71509_i0 PRJNA340009 71816 163 0.894737 1.45842131 Cavenderia fasciculata 261658 Evosea other_Eukaryota 58.5 3.22e-8   NR XP_004362351.1 261658 g71509 i0 48.1 1.91411042944785 52 27 95.7 0 3 158 227 278 XP_004362351.1 PhoPQ-activated pathogenicity-related protein [Cavenderia fasciculata] diamond 312 58.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
31781313 31781313 PRJNA340009_P_NODE_29517_length_228_cov_8.832402_g29210_i0 PRJNA340009 29517 228 8.832402 20.13787656 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 67.8 1.41e-11   NR PRP86794.1 1890364 g29210 i0 46 0.828947368421053 63 34 82.9 0 4 192 161 223 PRP86794.1 hypothetical protein PROFUN_05011 [Planoprotostelium fungivorum] diamond 189 67.8 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32097823 32097823 PRJNA340009_P_NODE_70198_length_163_cov_20.956140_g69891_i0 PRJNA340009 70198 163 20.95614 34.1585082 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 62 2e-9   NR KAH3759061.1 1580589 g69891 i0 54.5 4.95092024539877 44 20 81 0 2 133 279 322 KAH3759061.1 glycoside hydrolase family 27 protein [Pelomyxa schiedti] diamond 807 62 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
32224515 32224515 PRJNA340009_P_NODE_20038_length_269_cov_27.581818_g19731_i0 PRJNA340009 20038 269 27.581818 74.19509042 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 87 1.78e-19   NR KYQ91463.1 361077 g19731 i0 53.4 0.814126394052045 73 33 81.4 1 269 51 69 140 KYQ91463.1 hypothetical protein DLAC_08430 [Tieghemostelium lacteum] diamond 219 87 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
32382621 32382621 PRJNA340009_P_NODE_33199_length_217_cov_66.107143_g32892_i0 PRJNA340009 33199 217 66.107143 143.45250031 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 80.1 1.75e-15   NR PRP75504.1 1890364 g32892 i0 90 0.552995391705069 40 4 55.3 0 3 122 552 591 PRP75504.1 hypothetical protein PROFUN_10682 [Planoprotostelium fungivorum] diamond 120 80.1 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32666840 32666840 PRJNA340009_P_NODE_5940_length_445_cov_30.825758_g5633_i0 PRJNA340009 5940 445 30.825758 137.1746231 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.9 1.13e-18   NR XP_004335921.1 1257118 g5633 i0 56.7 0.451685393258427 67 29 45.2 0 340 140 5 71 XP_004335921.1 uncharacterized protein ACA1_364340 [Acanthamoeba castellanii str. Neff] diamond 201 85.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32698297 32698297 PRJNA340009_P_NODE_74460_length_162_cov_0.902655_g74153_i0 PRJNA340009 74460 162 0.902655 1.4623011 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 80.9 4.39e-16   NR KAH3744365.1 1580589 g74153 i0 67.9 0.981481481481482 53 15 98.1 1 2 160 547 597 KAH3744365.1 protein kinase [Pelomyxa schiedti] diamond 159 80.9 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;