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contig_metadata

21 rows where analysis = "diamond", bioproject = "PRJNA339266" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 21 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA339266 · 21 ✖

analysis 1

  • diamond · 21 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24021636 24021636 PRJNA339266_S_NODE_6859_length_197_cov_19.256250_g6848_i0 PRJNA339266 6859 197 19.25625 37.9348125 Plestiodon egregius 463521 Chordata Chordata 76.6 4.24e-15   NR NP_008780.1 463521 g6848 i0 58.2 7.53807106598985 55 23 83.8 0 1 165 167 221 NP_008780.1 cytochrome c oxidase subunit II [Plestiodon egregius] diamond 1485 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Scincidae Plestiodon Plestiodon egregius
26821671 26821671 PRJNA339266_S_NODE_13161_length_167_cov_2.446154_g13150_i0 PRJNA339266 13161 167 2.446154 4.08507718 Vombatus ursinus 29139 Chordata Chordata 43.9 0.00118   NR XP_027698346.1 29139 g13150 i0 45.7 0.62874251497006 35 19 62.9 0 165 61 63 97 XP_027698346.1 60S ribosomal protein L37-like [Vombatus ursinus] diamond 105 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Vombatidae Vombatus Vombatus ursinus
27611891 27611891 PRJNA339266_S_NODE_12584_length_169_cov_2.515152_g12573_i0 PRJNA339266 12584 169 2.515152 4.25060688 Gracilinanus agilis 191870 Chordata Chordata 47 2.87e-5   NR XP_044518926.1 191870 g12573 i0 71.9 1.70414201183432 32 9 56.8 0 158 63 23 54 XP_044518926.1 LOW QUALITY PROTEIN: 40S ribosomal protein S29-like [Gracilinanus agilis] diamond 288 47 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Didelphimorphia Didelphidae Gracilinanus Gracilinanus agilis
27611898 27611898 PRJNA339266_S_NODE_5804_length_206_cov_2.804734_g5793_i0 PRJNA339266 5804 206 2.804734 5.77775204 Latimeria chalumnae 7897 Chordata Chordata 49.7 8.13e-5   NR XP_064423149.1 7897 g5793 i0 56.5 2.24271844660194 46 10 52.4 1 192 85 445 490 XP_064423149.1 zinc finger BED domain-containing protein 5-like [Latimeria chalumnae] diamond 462 49.7 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
27706910 27706910 PRJNA339266_S_NODE_9184_length_183_cov_5.000000_g9173_i0 PRJNA339266 9184 183 5 9.15 Myxine glutinosa 7769 Chordata Chordata 54.3 1.41e-6   NR XP_067977694.1 7769 g9173 i0 62.8 0.704918032786885 43 13 65.6 1 64 183 31 73 XP_067977694.1 general transcription factor II-I repeat domain-containing protein 2-like [Myxine glutinosa] diamond 129 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
27818669 27818669 PRJNA339266_S_NODE_19544_length_151_cov_1.350877_g19533_i0 PRJNA339266 19544 151 1.350877 2.03982427 Chordata 7711 Chordata Chordata 58.9 1.98e-8   NR XP_038637445.1 7830 g19533 i0 100 105.476821192053 26 0 51.7 0 3 80 773 798 XP_038637445.1 RNA-binding protein 25b isoform X1 [Scyliorhinus canicula] diamond 15927 59.3 0.993254637436762 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus canicula
28228662 28228662 PRJNA339266_S_NODE_12726_length_168_cov_9.374046_g12715_i0 PRJNA339266 12726 168 9.374046 15.74839728 root 1 Root_unresolved Root_unresolved 56.6 6.75e-8   NR XP_025967716.1 8790 g12715 i0 52.2 11.9464285714286 46 22 82.1 0 168 31 126 171 XP_025967716.1 ADP-ribose glycohydrolase OARD1 isoform X2 [Dromaius novaehollandiae] diamond 2007 57 0.992982456140351 Eukaryota Opisthokonta Metazoa Chordata Aves Casuariiformes Dromaiidae Dromaius Dromaius novaehollandiae
28418592 28418592 PRJNA339266_S_NODE_13066_length_167_cov_4.407692_g13055_i0 PRJNA339266 13066 167 4.407692 7.36084564 Mammalia 40674 Chordata Chordata 50.4 7.35e-6   NR XP_035294859.1 10029 g13055 i0 55 2.1377245508982 40 18 71.9 0 3 122 89 128 XP_035294859.1 LOW QUALITY PROTEIN: 60S ribosomal protein L23-like [Cricetulus griseus] diamond 357 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
28495982 28495982 PRJNA339266_S_NODE_6467_length_201_cov_1.902439_g6456_i0 PRJNA339266 6467 201 1.902439 3.82390239 Branchiostoma belcheri 7741 Chordata Chordata 66.6 4.1e-11   NR KAI8484927.1 7741 g6456 i0 67.4 5.49253731343284 46 15 68.7 0 21 158 193 238 KAI8484927.1 hypothetical protein Bbelb_373340 [Branchiostoma belcheri] diamond 1104 66.6 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
28923433 28923433 PRJNA339266_S_NODE_15188_length_161_cov_1.935484_g15177_i0 PRJNA339266 15188 161 1.935484 3.11612924 Opisthokonta 33154 Chordata Chordata 87 1.63e-18   NR MEE6484150.1 8439 g15177 i0 79.2 2.96273291925466 53 11 98.8 0 161 3 312 364 MEE6484150.1 hypothetical protein [Ascaphus truei] diamond 477 87 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
29001415 29001415 PRJNA339266_S_NODE_5768_length_206_cov_5.662722_g5757_i0 PRJNA339266 5768 206 5.662722 11.66520732 Callorhinchus milii 7868 Chordata Chordata 48.5 9.56e-5   NR XP_007898372.1 7868 g5757 i0 45.1 2.22815533980583 51 28 74.3 0 199 47 115 165 XP_007898372.1 60S ribosomal protein L12 [Callorhinchus milii] diamond 459 48.9 0.991820040899796 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
29285025 29285025 PRJNA339266_S_NODE_15829_length_159_cov_3.147541_g15818_i0 PRJNA339266 15829 159 3.147541 5.00459019 Lontra canadensis 76717 Chordata Chordata 63.2 1.18e-10   NR XP_032727192.1 76717 g15818 i0 56 4.71698113207547 50 22 94.3 0 152 3 102 151 XP_032727192.1 60S ribosomal protein L8-like [Lontra canadensis] diamond 750 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Lontra Lontra canadensis
29807524 29807524 PRJNA339266_S_NODE_7911_length_190_cov_3.980392_g7900_i0 PRJNA339266 7911 190 3.980392 7.5627448 Cladistia 1338366 Chordata Chordata 75.9 4.17e-15   NR EMP39705.1 8469 g7900 i0 58.6 30.2210526315789 58 24 91.6 0 1 174 137 194 EMP39705.1 40S ribosomal protein S7, partial [Chelonia mydas] diamond 5742 76.6 0.990861618798956 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas
29979897 29979897 PRJNA339266_S_NODE_4891_length_215_cov_33.207865_g4880_i0 PRJNA339266 4891 215 33.207865 71.39690975 Rattus rattus 10117 Chordata Chordata 42.4 0.00577   NR XP_032745889.1 10117 g4880 i0 82.1 5.45581395348837 28 5 39.1 0 1 84 50 77 XP_032745889.1 LOW QUALITY PROTEIN: thymosin beta-4 [Rattus rattus] diamond 1173 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus rattus
30502700 30502700 PRJNA339266_P_NODE_6793_length_168_cov_3.137405_g6763_i0 PRJNA339266 6793 168 3.1374050000000002 5.2708404 root 1 Root_unresolved Root_unresolved 119 1e-29   NR XP_030110853.2 10090 g6763 i0 100 16.9821428571429 56 0 100 0 168 1 156 211 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 2853 119 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30945132 30945132 PRJNA339266_S_NODE_16214_length_158_cov_3.314050_g16203_i0 PRJNA339266 16214 158 3.31405 5.236199 Chordata 7711 Chordata Chordata 53.1 1.42e-6   NR AFK11613.1 7868 g16203 i0 61.5 34.0632911392405 39 15 74.1 0 157 41 147 185 AFK11613.1 60S ribosomal protein L10a-like protein [Callorhinchus milii] diamond 5382 53.5 0.992523364485981 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
31229180 31229180 PRJNA339266_S_NODE_4975_length_215_cov_1.544944_g4964_i0 PRJNA339266 4975 215 1.544944 3.3216296 root 1 Root_unresolved Root_unresolved 143 9.12e-38   NR XP_030109804.2 10090 g4964 i0 98.6 10.8976744186047 71 1 99.1 0 3 215 66 136 XP_030109804.2 uncharacterized protein Gm52666 [Mus musculus] diamond 2343 143 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
31560243 31560243 PRJNA339266_S_NODE_17076_length_156_cov_2.563025_g17065_i0 PRJNA339266 17076 156 2.563025 3.998319 Hyperolius riggenbachi 752182 Chordata Chordata 55.1 4.94e-7   NR XP_068110944.1 752182 g17065 i0 54 1.86538461538462 50 22 94.2 1 6 152 7 56 XP_068110944.1 olfactory receptor 10A7-like [Hyperolius riggenbachi] diamond 291 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
32002939 32002939 PRJNA339266_S_NODE_7038_length_196_cov_3.314465_g7027_i0 PRJNA339266 7038 196 3.314465 6.4963514 Calidris pugnax 198806 Chordata Chordata 42.4 0.0223   NR XP_014796320.1 198806 g7027 i0 73.9 0.352040816326531 23 6 35.2 0 191 123 99 121 XP_014796320.1 PREDICTED: U1 small nuclear ribonucleoprotein C-like isoform X1 [Calidris pugnax] diamond 69 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Scolopacidae Calidris Calidris pugnax
32666797 32666797 PRJNA339266_S_NODE_17700_length_155_cov_1.118644_g17689_i0 PRJNA339266 17700 155 1.118644 1.7338982 Mycteria americana 33587 Chordata Chordata 54.7 6.78e-7   NR KAK4818546.1 33587 g17689 i0 51.2 11.6516129032258 43 20 83.2 1 3 131 688 729 KAK4818546.1 hypothetical protein QYF61_014489 [Mycteria americana] diamond 1806 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Ciconiiformes Ciconiidae Mycteria Mycteria americana
32729908 32729908 PRJNA339266_S_NODE_15720_length_159_cov_6.983607_g15709_i0 PRJNA339266 15720 159 6.983607 11.10393513 Pygoscelis antarcticus 79643 Chordata Chordata 44.3 0.00313   NR YP_008083523.1 79643 g15709 i0 67.6 6.33962264150943 37 12 69.8 0 10 120 195 231 YP_008083523.1 ATP synthase F0 subunit 6 [Pygoscelis antarcticus] diamond 1008 44.7 0.991051454138702 Eukaryota Opisthokonta Metazoa Chordata Aves Sphenisciformes Spheniscidae Pygoscelis Pygoscelis antarcticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;