RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA339266" and tax_kingdom = "Heunggongvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Heunggongvirae · 4 ✖

bioproject 1

  • PRJNA339266 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28874662 28874662 PRJNA339266_S_NODE_4688_length_218_cov_2.209945_g4677_i0 PRJNA339266 4688 218 2.209945 4.8176801 Ralstonia phage phiAp1 2783867 Viruses Viruses 95.5 7.14e-21   NR YP_009788675.1 2783867 g4677 i0 62 2.93119266055046 71 27 97.7 0 4 216 272 342 YP_009788675.1 RNA polymerase [Ralstonia phage phiAp1] diamond 639 95.5 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes Autographivirales Autoscriptoviridae Ayakvirus Ayakvirus Ap1
29632132 29632132 PRJNA339266_P_NODE_2510_length_215_cov_22.988764_g2480_i0 PRJNA339266 2510 215 22.988764 49.4258426 uncultured Caudovirales phage 2100421 Viruses Viruses 60.5 7.98e-9   NR CAB4196828.1 2100421 g2480 i0 59.2 0.683720930232558 49 20 68.4 0 147 1 76 124 CAB4196828.1 HNHc domain containing protein [uncultured Caudovirales phage] diamond 147 60.5 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes   Peduoviridae Maltschvirus Maltschvirus maltsch
29821694 29821694 PRJNA339266_S_NODE_9711_length_181_cov_1.680556_g9700_i0 PRJNA339266 9711 181 1.680556 3.04180636 Caudoviricetes sp. 2832643 Viruses Viruses 45.8 0.00104   NR DAP39352.1 2832643 g9700 i0 95.2 1.80662983425414 21 1 34.8 0 2 64 189 209 DAP39352.1 MAG TPA: Cytosine specific methyltransferase [Caudoviricetes sp.] diamond 327 45.8 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Caudoviricetes sp.
32778370 32778370 PRJNA339266_P_NODE_6060_length_179_cov_1.464789_g6030_i0 PRJNA339266 6060 179 1.464789 2.62197231 root 1 Root_unresolved Root_unresolved 73.9 1.52e-13   NR YP_007673069.1 754037 g6030 i0 58.9 19.9106145251397 56 23 93.9 0 176 9 135 190 YP_007673069.1 DNA primase-helicase subunit [Synechococcus phage S-CAM1] diamond 3564 74.3 0.994616419919246 Viruses   Heunggongvirae Uroviricota Caudoviricetes Pantevenvirales Kyanoviridae Anaposvirus Anaposvirus socalone

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;