RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA339266" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA339266 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30359516 30359516 PRJNA339266_S_NODE_14252_length_164_cov_1.346457_g14241_i0 PRJNA339266 14252 164 1.346457 2.20818948 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 90.5 5.65e-20   NR HEY5953652.1 2832348 g14241 i0 94.2 5.70731707317073 52 3 95.1 0 5 160 179 230 HEY5953652.1 efflux RND transporter permease subunit [Terrimicrobiaceae bacterium] diamond 936 90.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
31718204 31718204 PRJNA339266_S_NODE_13857_length_165_cov_1.906250_g13846_i0 PRJNA339266 13857 165 1.90625 3.1453125 Verrucomicrobia bacterium TMED4 1986790 Bacteria Bacteria 41.2 0.0445   NR OUU12443.1 1986790 g13846 i0 47.5 0.727272727272727 40 19 72.7 1 163 44 132 169 OUU12443.1 MAG: fructosamine kinase family protein [Verrucomicrobia bacterium TMED40] diamond 120 41.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium TMED40

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;