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contig_metadata

36 rows where analysis = "diamond", bioproject = "PRJNA335774" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 36 ✖

tax_kingdom 1

bioproject 1

  • PRJNA335774 · 36 ✖

analysis 1

  • diamond · 36 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20195737 20195737 PRJNA335774_P_NODE_35576_length_264_cov_1.167539_g35424_i0 PRJNA335774 35576 264 1.167539 3.08230296 Hamadaea sp. 2024425 Bacteria Bacteria 90.5 7.56e-19   NR WP_290863459.1 2024425 g35424 i0 53.5 4.44318181818182 86 38 96.6 2 259 5 128 212 WP_290863459.1 MFS transporter [Hamadaea sp.] diamond 1173 90.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Hamadaea Hamadaea sp.
26631494 26631494 PRJNA335774_P_NODE_18601_length_353_cov_0.957143_g18449_i0 PRJNA335774 18601 353 0.957143 3.37871479 Demequina sp. 2050685 Bacteria Bacteria 79.3 9.28e-15   NR MCR6712026.1 2050685 g18449 i0 65.5 0.46742209631728 55 19 46.7 0 352 188 267 321 MCR6712026.1 hypothetical protein [Demequina sp.] diamond 165 79.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Demequinaceae Demequina Demequina sp.
26757989 26757989 PRJNA335774_P_NODE_21041_length_335_cov_1.175573_g20889_i0 PRJNA335774 21041 335 1.175573 3.93816955 Mycobacteriaceae bacterium 2448780 Bacteria Bacteria 106 1.84e-25   NR NBP86788.1 2448780 g20889 i0 46.8 2.98208955223881 111 59 99.4 0 334 2 127 237 NBP86788.1 class I SAM-dependent methyltransferase [Mycobacteriaceae bacterium] diamond 999 106 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae   Mycobacteriaceae bacterium
26853381 26853381 PRJNA335774_P_NODE_37821_length_255_cov_1.225275_g37669_i0 PRJNA335774 37821 255 1.225275 3.12445125 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 62.8 2.77e-9   NR HVM55672.1 2201156 g37669 i0 44.8 1.02352941176471 87 37 98.8 5 255 4 133 211 HVM55672.1 nucleoside hydrolase [Acidimicrobiales bacterium] diamond 261 62.8 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
26916441 26916441 PRJNA335774_P_NODE_36122_length_262_cov_1.010582_g35970_i0 PRJNA335774 36122 262 1.010582 2.64772484 Streptomyces sp. NPDC 1931 Bacteria Bacteria 43.1 0.0341   NR WP_389042908.1 3364710 g35970 i0 53.3 0.515267175572519 45 18 48.1 1 133 8 230 274 WP_389042908.1 methyltransferase [Streptomyces sp. NPDC005262] diamond 135 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC005262
26979654 26979654 PRJNA335774_P_NODE_26562_length_303_cov_1.865217_g26410_i0 PRJNA335774 26562 303 1.865217 5.65160751 Kitasatospora sp. NPDC 1871188 Bacteria Bacteria 66.6 3.22e-10   NR WP_350772165.1 3154519 g26410 i0 38.2 2.41584158415842 89 55 88.1 0 31 297 675 763 WP_350772165.1 amino acid adenylation domain-containing protein [Kitasatospora sp. NPDC001527] diamond 732 66.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. NPDC001527
27106083 27106083 PRJNA335774_P_NODE_18482_length_354_cov_0.964413_g18330_i0 PRJNA335774 18482 354 0.964413 3.41402202 Actinomycetota bacterium 2900548 Bacteria Bacteria 52 5.48e-5   NR MBX3284814.1 2900548 g18330 i0 35 1.72881355932203 103 59 83.1 4 330 37 35 134 MBX3284814.1 ankyrin repeat domain-containing protein [Actinomycetota bacterium] diamond 612 52 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
27169215 27169215 PRJNA335774_P_NODE_23922_length_318_cov_0.942857_g23770_i0 PRJNA335774 23922 318 0.942857 2.99828526 Acidimicrobiaceae bacterium 2024894 Bacteria Bacteria 101 5.02e-24   NR MBC83285.1 2024894 g23770 i0 48 0.943396226415094 100 42 94.3 2 315 16 113 202 MBC83285.1 hypothetical protein [Acidimicrobiaceae bacterium] diamond 300 101 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Acidimicrobiaceae   Acidimicrobiaceae bacterium
27295920 27295920 PRJNA335774_P_NODE_42243_length_248_cov_0.880000_g42091_i0 PRJNA335774 42243 248 0.88 2.1824 Yinghuangia seranimata 408067 Bacteria Bacteria 45.4 0.00432   NR WP_281470510.1 408067 g42091 i0 40 1.86290322580645 60 35 72.6 1 247 68 127 185 WP_281470510.1 ankyrin repeat domain-containing protein [Yinghuangia seranimata] diamond 462 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Yinghuangia Yinghuangia seranimata
27359255 27359255 PRJNA335774_P_NODE_13763_length_400_cov_1.177370_g13611_i0 PRJNA335774 13763 400 1.17737 4.70948 Nocardia alni 1859 Bacteria Bacteria 77.8 1.14e-13   NR WP_216894309.1 2815723 g13611 i0 37.4 1.6575 123 61 87 4 48 395 203 316 WP_216894309.1 hypothetical protein [Nocardia alni] diamond 663 77.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia alni
27517008 27517008 PRJNA335774_P_NODE_25663_length_308_cov_1.310638_g25511_i0 PRJNA335774 25663 308 1.310638 4.03676504 Humibacillus xanthopallidus 412689 Bacteria Bacteria 53.1 1.75e-5   NR WP_185749101.1 412689 g25511 i0 35.9 1.00324675324675 103 63 99.4 3 307 2 130 230 WP_185749101.1 vWA domain-containing protein [Humibacillus xanthopallidus] diamond 309 53.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Humibacillus Humibacillus xanthopallidus
27675119 27675119 PRJNA335774_P_NODE_30564_length_285_cov_1.075472_g30412_i0 PRJNA335774 30564 285 1.075472 3.0650952 Pilimelia sp. 2605714 Bacteria Bacteria 55.8 6.33e-7   NR HWH00255.1 2605714 g30412 i0 42.5 0.768421052631579 73 41 75.8 1 60 275 83 155 HWH00255.1 alpha-ketoglutarate-dependent dioxygenase AlkB [Pilimelia sp.] diamond 219 55.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Pilimelia Pilimelia sp.
28148615 28148615 PRJNA335774_P_NODE_30865_length_284_cov_0.862559_g30713_i0 PRJNA335774 30865 284 0.862559 2.44966756 Microthrixaceae bacterium 2497627 Bacteria Bacteria 44.3 0.0157   NR MFV0315796.1 2497627 g30713 i0 44 0.528169014084507 50 25 49.6 1 20 160 201 250 MFV0315796.1 GDSL-type esterase/lipase family protein [Microthrixaceae bacterium] diamond 150 44.3 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Microthrixaceae   Microthrixaceae bacterium
28559137 28559137 PRJNA335774_P_NODE_40727_length_249_cov_0.875000_g40575_i0 PRJNA335774 40727 249 0.875 2.17875 Leucobacter ruminantium 1289170 Bacteria Bacteria 121 3.6499999999999997e-31   NR WP_208044399.1 1289170 g40575 i0 79 0.975903614457831 81 12 91.6 1 2 229 9 89 WP_208044399.1 ABC transporter substrate-binding protein [Leucobacter ruminantium] diamond 243 121 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter ruminantium
29001354 29001354 PRJNA335774_P_NODE_11988_length_425_cov_1.269886_g11836_i0 PRJNA335774 11988 425 1.269886 5.3970155 Actinoplanes regularis 52697 Bacteria Bacteria 124 4.749999999999999e-31   NR WP_089293525.1 52697 g11836 i0 52.3 1.86352941176471 132 52 93.2 2 425 30 31 151 WP_089293525.1 aldose epimerase family protein [Actinoplanes regularis] diamond 792 124 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes regularis
29176324 29176324 PRJNA335774_P_NODE_27789_length_297_cov_1.651786_g27637_i0 PRJNA335774 27789 297 1.651786 4.90580442 Bacteria 2 Bacteria Bacteria 110 1.13e-26   NR WP_226352717.1 2846759 g27637 i0 53.7 7.61616161616162 95 42 96 1 3 287 163 255 WP_226352717.1 NADP-dependent oxidoreductase [Pseudonocardia sp. ICBG601] diamond 2262 110 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. ICBG601
29537675 29537675 PRJNA335774_P_NODE_290_length_1595_cov_4.156373_g264_i0 PRJNA335774 290 1595 4.156373 66.29414935 Actinomycetota bacterium 2900548 Bacteria Bacteria 50.4 0.0181   NR MEC7001195.1 2900548 g264 i0 30.9 0.261442006269592 139 74 22.9 6 1464 1099 274 407 MEC7001195.1 hypothetical protein [Actinomycetota bacterium] diamond 417 50.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29632119 29632119 PRJNA335774_P_NODE_44850_length_245_cov_0.895349_g44698_i0 PRJNA335774 44850 245 0.895349 2.19360505 Actinomycetota bacterium 2900548 Bacteria Bacteria 65.1 6.49e-11   NR HEX8100744.1 2900548 g44698 i0 38.5 5.82857142857143 78 48 95.5 0 11 244 43 120 HEX8100744.1 endonuclease VII domain-containing protein [Actinomycetota bacterium] diamond 1428 65.1 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29821674 29821674 PRJNA335774_P_NODE_44151_length_246_cov_0.838150_g43999_i0 PRJNA335774 44151 246 0.83815 2.061849 Streptacidiphilus monticola 2161674 Bacteria Bacteria 43.5 0.0199   NR MFD0330360.1 2161674 g43999 i0 46.3 0.817073170731707 67 29 79.3 3 48 242 101 162 MFD0330360.1 carbohydrate-binding protein [Streptacidiphilus monticola] diamond 201 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptacidiphilus Streptacidiphilus monticola
30296264 30296264 PRJNA335774_P_NODE_40412_length_250_cov_0.864407_g40260_i0 PRJNA335774 40412 250 0.864407 2.1610175 Cellulomonas sp. 40001 Bacteria Bacteria 43.1 0.0298   NR HEY0119421.1 40001 g40260 i0 35.4 0.78 65 39 74.4 1 198 13 371 435 HEY0119421.1 DUF222 domain-containing protein [Cellulomonas sp.] diamond 195 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp.
30706453 30706453 PRJNA335774_P_NODE_26234_length_305_cov_1.327586_g26082_i0 PRJNA335774 26234 305 1.327586 4.0491373 unclassified Streptomyces 2593676 Bacteria Bacteria 43.9 0.00988   NR WP_385542214.1 2593676 g26082 i0 34.8 0.649180327868852 66 39 64.9 2 283 86 61 122 WP_385542214.1 MULTISPECIES: MerR family transcriptional regulator [unclassified Streptomyces] diamond 198 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
30864420 30864420 PRJNA335774_P_NODE_23714_length_319_cov_1.089431_g23562_i0 PRJNA335774 23714 319 1.089431 3.47528489 Geodermatophilus normandii 1137989 Bacteria Bacteria 78.2 1.52e-14   NR WP_204264519.1 1137989 g23562 i0 42.7 0.90282131661442 96 55 90.3 0 317 30 162 257 WP_204264519.1 TauD/TfdA family dioxygenase [Geodermatophilus normandii] diamond 288 78.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus normandii
30896300 30896300 PRJNA335774_P_NODE_8634_length_489_cov_1.447115_g8482_i0 PRJNA335774 8634 489 1.447115 7.07639235 Nocardia puris 208602 Bacteria Bacteria 79 9.58e-14   NR WP_195124445.1 208602 g8482 i0 51.9 2.01226993865031 79 36 48.5 1 2 238 86 162 WP_195124445.1 cation:proton antiporter [Nocardia puris] diamond 984 79 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia puris
31197345 31197345 PRJNA335774_P_NODE_42935_length_247_cov_0.885057_g42783_i0 PRJNA335774 42935 247 0.885057 2.18609079 FCB group 1783270 Bacteria Bacteria 75.9 8.4e-14   NR HXY91285.1 2080302 g42783 i0 62.1 3.41295546558704 58 20 70.4 1 237 64 486 541 HXY91285.1 AMP-binding protein [Acidimicrobiia bacterium] diamond 843 76.6 0.990861618798956 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
31528502 31528502 PRJNA335774_P_NODE_33396_length_273_cov_1.155000_g33244_i0 PRJNA335774 33396 273 1.155 3.15315 Streptomyces sp. SID1 2690252 Bacteria Bacteria 53.1 1.14e-5   NR WP_164262650.1 2706028 g33244 i0 50 1.26373626373626 70 31 73.6 3 73 273 43 111 WP_164262650.1 ATP-grasp domain-containing protein [Streptomyces sp. SID10853] diamond 345 53.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SID10853
32129611 32129611 PRJNA335774_P_NODE_15358_length_382_cov_0.996764_g15206_i0 PRJNA335774 15358 382 0.996764 3.80763848 Streptomyces 1883 Bacteria Bacteria 88.2 1.62e-17   NR WP_051720655.1 1883 g15206 i0 53.5 2.70157068062827 86 39 67.5 1 113 370 80 164 WP_051720655.1 MULTISPECIES: ATP-grasp domain-containing protein [Streptomyces] diamond 1032 88.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
32224473 32224473 PRJNA335774_P_NODE_40338_length_250_cov_0.870056_g40186_i0 PRJNA335774 40338 250 0.870056 2.17514 Eggerthellaceae bacterium 1972561 Bacteria Bacteria 94 1.69e-22   NR MCL1797062.1 1972561 g40186 i0 51.8 0.996 83 40 99.6 0 249 1 12 94 MCL1797062.1 hypothetical protein [Eggerthellaceae bacterium] diamond 249 94 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae   Eggerthellaceae bacterium
32224476 32224476 PRJNA335774_P_NODE_43058_length_247_cov_0.885057_g42906_i0 PRJNA335774 43058 247 0.885057 2.18609079 Microbacterium sp. SSM24 2991714 Bacteria Bacteria 134 1.32e-34   NR WP_264708293.1 2991714 g42906 i0 82.9 1.9919028340081 82 14 99.6 0 2 247 464 545 WP_264708293.1 thiol reductant ABC exporter subunit CydD [Microbacterium sp. SSM24] diamond 492 134 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. SSM24
32241966 32241966 PRJNA335774_P_NODE_47558_length_242_cov_0.911243_g47406_i0 PRJNA335774 47558 242 0.911243 2.20520806 Bacteria 2 Bacteria Bacteria 56.6 3.86e-7   NR WP_155848813.1 208444 g47406 i0 51.9 1.22727272727273 54 26 66.9 0 1 162 80 133 WP_155848813.1 hypothetical protein [Amycolatopsis vancoresmycina] diamond 297 57 0.992982456140351 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis vancoresmycina
32319636 32319636 PRJNA335774_P_NODE_48579_length_241_cov_0.869048_g48427_i0 PRJNA335774 48579 241 0.869048 2.09440568 Pedococcus bigeumensis 433644 Bacteria Bacteria 53.9 4.1e-6   NR WP_344136208.1 433644 g48427 i0 58.1 1.26970954356846 43 18 53.5 0 131 3 432 474 WP_344136208.1 HYR domain-containing protein [Pedococcus bigeumensis] diamond 306 53.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Pedococcus Pedococcus bigeumensis
32446069 32446069 PRJNA335774_P_NODE_3099_length_749_cov_3.258876_g611_i1 PRJNA335774 3099 749 3.258876 24.40898124 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 84.7 1.62e-15   NR MEZ5183991.1 2201156 g611 i1 47.4 0.761014686248331 95 44 36.4 2 610 338 166 258 MEZ5183991.1 PqqD family peptide modification chaperone [Acidimicrobiales bacterium] diamond 570 84.7 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
32446085 32446085 PRJNA335774_P_NODE_659_length_1303_cov_2.949593_g611_i0 PRJNA335774 659 1303 2.949593 38.43319679 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 84.7 1.74e-14   NR MEZ5183991.1 2201156 g611 i0 47.4 0.437452033768227 95 44 21 2 1164 892 166 258 MEZ5183991.1 PqqD family peptide modification chaperone [Acidimicrobiales bacterium] diamond 570 84.7 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
32541008 32541008 PRJNA335774_P_NODE_32479_length_277_cov_1.102941_g32327_i0 PRJNA335774 32479 277 1.102941 3.05514657 Streptomyces gibsoniae 3075529 Bacteria Bacteria 44.7 0.0121   NR WP_311698039.1 3075529 g32327 i0 36.9 0.703971119133574 65 40 69.3 1 19 210 369 433 WP_311698039.1 Pls/PosA family non-ribosomal peptide synthetase [Streptomyces gibsoniae] diamond 195 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces gibsoniae
32572634 32572634 PRJNA335774_P_NODE_41759_length_248_cov_0.880000_g41607_i0 PRJNA335774 41759 248 0.88 2.1824 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 42.7 0.0366   NR HEU5158841.1 2339230 g41607 i0 34.8 0.834677419354839 69 40 77.4 1 24 215 196 264 HEU5158841.1 CoA-transferase [Streptosporangiaceae bacterium] diamond 207 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
32603884 32603884 PRJNA335774_P_NODE_40660_length_249_cov_1.130682_g40508_i0 PRJNA335774 40660 249 1.130682 2.81539818 Actinomycetota bacterium 2900548 Bacteria Bacteria 43.1 0.0283   NR HEX2236444.1 2900548 g40508 i0 39.2 0.891566265060241 74 42 85.5 2 2 214 344 417 HEX2236444.1 ferredoxin reductase family protein [Actinomycetota bacterium] diamond 222 43.1 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32792549 32792549 PRJNA335774_P_NODE_38680_length_251_cov_1.674157_g38528_i0 PRJNA335774 38680 251 1.674157 4.20213407 Thermoleophilaceae bacterium 2732252 Bacteria Bacteria 56.6 2.23e-7   NR MFL5865810.1 2732252 g38528 i0 41.4 2.00796812749004 87 35 98 4 247 2 78 153 MFL5865810.1 class I SAM-dependent methyltransferase [Thermoleophilaceae bacterium] diamond 504 56.6 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Thermoleophilales Thermoleophilaceae   Thermoleophilaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;