RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA330616" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA330616 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16967150 16967150 PRJNA330616_P_NODE_30874_length_162_cov_0.902655_g30465_i0 PRJNA330616 30874 162 0.902655 1.4623011 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 97.8 3.5700000000000003e-22   NR MEN9361771.1 2026799 g30465 i0 86.5 0.962962962962963 52 7 96.3 0 161 6 122 173 MEN9361771.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 156 97.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
18241437 18241437 PRJNA330616_P_NODE_32475_length_161_cov_0.910714_g32066_i0 PRJNA330616 32475 161 0.910714 1.46624954 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 76.3 1.84e-14   NR MBM3826354.1 2026799 g32066 i0 85.4 6.3167701863354 41 6 76.4 0 125 3 4 44 MBM3826354.1 PhoH family protein [Verrucomicrobiota bacterium] diamond 1017 76.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30281902 30281902 PRJNA330616_P_NODE_30832_length_162_cov_0.902655_g30423_i0 PRJNA330616 30832 162 0.902655 1.4623011 Bacteria 2 Bacteria Bacteria 57.8 6.32e-8   NR MBS0633223.1 2026799 g30423 i0 53.8 1.92592592592593 52 24 96.3 0 156 1 316 367 MBS0633223.1 response regulator [Verrucomicrobiota bacterium] diamond 312 57.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30579882 30579882 PRJNA330616_P_NODE_31413_length_162_cov_0.902655_g31004_i0 PRJNA330616 31413 162 0.902655 1.4623011 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 98.6 2.28e-22   NR HEX5222028.1 2499141 g31004 i0 94.3 0.981481481481482 53 3 98.1 0 160 2 329 381 HEX5222028.1 D-aminoacylase [Verrucomicrobiia bacterium] diamond 159 98.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
31749607 31749607 PRJNA330616_P_NODE_25997_length_167_cov_0.864407_g25588_i0 PRJNA330616 25997 167 0.864407 1.44355969 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 48.5 1.19e-4   NR MEX2579202.1 2026801 g25588 i0 42.6 2.74850299401198 54 28 91.6 1 14 166 218 271 MEX2579202.1 M48 family metallopeptidase [Verrucomicrobiales bacterium] diamond 459 48.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
32066018 32066018 PRJNA330616_P_NODE_11138_length_248_cov_1.025126_g10729_i0 PRJNA330616 11138 248 1.025126 2.54231248 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 50.4 1.18e-5   NR PYK27621.1 2026799 g10729 i0 61.1 0.810483870967742 36 14 43.5 0 119 12 1 36 PYK27621.1 MAG: hypothetical protein DME59_04320 [Verrucomicrobiota bacterium] diamond 201 50.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;