RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA330616" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA330616 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6767169 6767169 PRJNA330616_P_NODE_1466_length_765_cov_2.587989_g1115_i0 PRJNA330616 1466 765 2.587989 19.79811585 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 278 2.07e-90   NR HBY65360.1 1898209 g1115 i0 58.8 0.96078431372549 245 93 96.1 1 3 737 36 272 HBY65360.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 735 278 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
30611574 30611574 PRJNA330616_P_NODE_28313_length_165_cov_0.879310_g27904_i0 PRJNA330616 28313 165 0.87931 1.4508615 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 96.3 8.62e-24   NR MDV3191833.1 2754999 g27904 i0 92.3 1.89090909090909 52 4 94.5 0 156 1 73 124 MDV3191833.1 hypothetical protein [Candidatus Phytoplasma australasiaticum] diamond 312 96.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum
32020180 32020180 PRJNA330616_P_NODE_29778_length_163_cov_0.894737_g29369_i0 PRJNA330616 29778 163 0.894737 1.45842131 Bacteria candidate phyla 1783234 Bacteria Bacteria 90.1 1.03e-19   NR MCI7602096.1 37628 g29369 i0 75.9 655.858895705521 54 13 99.4 0 2 163 28 81 MCI7602096.1 elongation factor Tu [Mollicutes bacterium] diamond 106905 90.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;