RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA330616" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA330616 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15692508 15692508 PRJNA330616_P_NODE_3593_length_455_cov_2.007389_g3186_i0 PRJNA330616 3593 455 2.007389 9.13361995 Deinococcus sp. JMULE3 2518341 Bacteria Bacteria 281 1.62e-86   NR WP_254605599.1 2518341 g3186 i0 90.7 0.995604395604396 151 14 99.6 0 455 3 366 516 WP_254605599.1 S-layer homology domain-containing protein [Deinococcus sp. JMULE3] diamond 453 281 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. JMULE3
27200842 27200842 PRJNA330616_P_NODE_24662_length_170_cov_1.264463_g24253_i0 PRJNA330616 24662 170 1.264463 2.1495871 Deinococcus sp. JMULE3 2518341 Bacteria Bacteria 111 2.29e-27   NR WP_174366630.1 2518341 g24253 i0 98.2 0.988235294117647 56 1 98.8 0 169 2 263 318 WP_174366630.1 S-layer homology domain-containing protein [Deinococcus sp. JMULE3] diamond 168 111 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. JMULE3
27990713 27990713 PRJNA330616_P_NODE_16985_length_203_cov_1.987013_g16576_i0 PRJNA330616 16985 203 1.987013 4.03363639 Deinococcus carri 1211323 Bacteria Bacteria 52.4 1.42e-6   NR WP_345464528.1 1211323 g16576 i0 40.9 0.975369458128079 66 39 97.5 0 2 199 25 90 WP_345464528.1 type II secretion system protein [Deinococcus carri] diamond 198 52.4 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus carri
30801207 30801207 PRJNA330616_P_NODE_9074_length_275_cov_2.477876_g8665_i0 PRJNA330616 9074 275 2.477876 6.814159 Deinococcus sp. JMULE3 2518341 Bacteria Bacteria 139 8.64e-36   NR WP_254605599.1 2518341 g8665 i0 73.6 0.992727272727273 91 24 99.3 0 275 3 770 860 WP_254605599.1 S-layer homology domain-containing protein [Deinococcus sp. JMULE3] diamond 273 139 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. JMULE3
31686348 31686348 PRJNA330616_P_NODE_28157_length_165_cov_0.879310_g27748_i0 PRJNA330616 28157 165 0.87931 1.4508615 Deinococcus aestuarii 2774531 Bacteria Bacteria 52.8 4.09e-7   NR WP_216326008.1 2774531 g27748 i0 74.3 0.636363636363636 35 9 63.6 0 1 105 50 84 WP_216326008.1 helix-turn-helix domain-containing protein [Deinococcus aestuarii] diamond 105 52.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aestuarii
32002883 32002883 PRJNA330616_P_NODE_32558_length_161_cov_0.910714_g32149_i0 PRJNA330616 32558 161 0.910714 1.46624954 unclassified Deinococcus 2623546 Bacteria Bacteria 74.7 5.62e-14   NR WP_230270782.1 2623546 g32149 i0 96.2 0.987577639751553 53 2 98.8 0 2 160 223 275 WP_230270782.1 MULTISPECIES: RNA-guided endonuclease InsQ/TnpB family protein [unclassified Deinococcus] diamond 159 74.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus  
32887042 32887042 PRJNA330616_P_NODE_32500_length_161_cov_0.910714_g32091_i0 PRJNA330616 32500 161 0.910714 1.46624954 uncultured Deinococcus sp. 158789 Bacteria Bacteria 98.2 3.58e-22   NR WP_288402714.1 158789 g32091 i0 100 0.987577639751553 53 0 98.8 0 3 161 22 74 WP_288402714.1 DUF4900 domain-containing protein [uncultured Deinococcus sp.] diamond 159 98.2 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus uncultured Deinococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;