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contig_metadata

20 rows where analysis = "diamond", bioproject = "PRJNA330616" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA330616 · 20 ✖

analysis 1

  • diamond · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4216946 4216946 PRJNA330616_P_NODE_2264_length_597_cov_2.145985_g1866_i0 PRJNA330616 2264 597 2.145985 12.81153045 Metazoa 33208 Chordata Chordata 256 1.07e-78   NR KAK9394781.1 8729 g1866 i0 67.7 57.2562814070352 189 51 95 1 582 16 421 599 KAK9394781.1 60S ribosomal protein L11 [Crotalus adamanteus] diamond 34182 257 0.996108949416342 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
13143174 13143174 PRJNA330616_P_NODE_19051_length_193_cov_1.402778_g18642_i0 PRJNA330616 19051 193 1.402778 2.70736154 Branchiostoma floridae 7739 Chordata Chordata 118 4.17e-31   NR XP_035694028.1 7739 g18642 i0 87.5 0.994818652849741 64 8 99.5 0 192 1 11 74 XP_035694028.1 60S ribosomal protein L8-like [Branchiostoma floridae] diamond 192 118 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
26947939 26947939 PRJNA330616_P_NODE_29762_length_163_cov_0.894737_g29353_i0 PRJNA330616 29762 163 0.894737 1.45842131 Myxine glutinosa 7769 Chordata Chordata 72.4 4.39e-13   NR XP_067973508.1 7769 g29353 i0 51 1.87730061349693 51 25 93.9 0 154 2 40 90 XP_067973508.1 protein kinase C alpha type-like isoform X2 [Myxine glutinosa] diamond 306 72.4 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
27169176 27169176 PRJNA330616_P_NODE_15342_length_213_cov_1.548780_g14933_i0 PRJNA330616 15342 213 1.54878 3.2989014 Branchiostoma belcheri 7741 Chordata Chordata 86.3 1.25e-19   NR XP_019632425.1 7741 g14933 i0 55.7 5.87323943661972 70 31 98.6 0 1 210 58 127 XP_019632425.1 PREDICTED: transcription factor BTF3 homolog 4-like [Branchiostoma belcheri] diamond 1251 86.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
27200852 27200852 PRJNA330616_P_NODE_3602_length_454_cov_1.849383_g3195_i0 PRJNA330616 3602 454 1.849383 8.39619882 Caretta caretta 8467 Chordata Chordata 87.8 3.93e-18   NR CAM2107459.1 8467 g3195 i0 53 7.84361233480176 115 53 76 1 94 438 103 216 CAM2107459.1 unnamed protein product [Caretta caretta] diamond 3561 87.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
27959002 27959002 PRJNA330616_P_NODE_32905_length_156_cov_2.392523_g32496_i0 PRJNA330616 32905 156 2.392523 3.73233588 Bufotes viridis 30338 Chordata Chordata 46.6 5.09e-4   NR CAK8609802.1 30338 g32496 i0 56.3 1.23076923076923 32 14 61.5 0 58 153 1 32 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 192 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28134336 28134336 PRJNA330616_P_NODE_30305_length_163_cov_0.894737_g29896_i0 PRJNA330616 30305 163 0.894737 1.45842131 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 63.2 7.87e-10   NR CAB3267057.1 59560 g29896 i0 53.8 6.49693251533742 52 24 95.7 0 163 8 364 415 CAB3267057.1 transmembrane protein 180 [Phallusia mammillata] diamond 1059 63.2 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
28165813 28165813 PRJNA330616_P_NODE_26165_length_167_cov_0.864407_g25756_i0 PRJNA330616 26165 167 0.864407 1.44355969 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 68.9 6.47e-12   NR XP_027480201.2 9704 g25756 i0 69.2 15.4850299401198 52 16 93.4 0 2 157 190 241 XP_027480201.2 uncharacterized protein LOC113938920 [Zalophus californianus] diamond 2586 68.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Otariidae Zalophus Zalophus californianus
28242993 28242993 PRJNA330616_P_NODE_23446_length_174_cov_2.528000_g23037_i0 PRJNA330616 23446 174 2.528 4.39872 Lamprotornis superbus 245042 Chordata Chordata 69.7 1.35e-12   NR KAI1234130.1 245042 g23037 i0 61.1 7.72413793103448 54 19 93.1 1 173 12 129 180 KAI1234130.1 hypothetical protein IHE44_0003845 [Lamprotornis superbus] diamond 1344 69.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sturnidae Lamprotornis Lamprotornis superbus
28450092 28450092 PRJNA330616_P_NODE_22246_length_179_cov_1.569231_g21837_i0 PRJNA330616 22246 179 1.569231 2.80892349 Opisthokonta 33154 Chordata Chordata 72 4.76e-13   NR KAJ1123966.1 8319 g21837 i0 57.1 8.64804469273743 70 19 98.9 1 177 1 38 107 KAJ1123966.1 hypothetical protein NDU88_002433 [Pleurodeles waltl] diamond 1548 72 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
28891771 28891771 PRJNA330616_P_NODE_26628_length_166_cov_0.871795_g26219_i0 PRJNA330616 26628 166 0.871795 1.4471797 Chordata 7711 Chordata Chordata 41.2 0.0479   NR XP_044160400.1 30331 g26219 i0 69.2 1.44578313253012 26 8 47 0 2 79 1302 1327 XP_044160400.1 aldehyde oxidase-like [Bufo gargarizans] diamond 240 41.6 0.990384615384615 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufo Bufo gargarizans
29001345 29001345 PRJNA330616_P_NODE_27868_length_165_cov_0.879310_g27459_i0 PRJNA330616 27868 165 0.87931 1.4508615 Suncus etruscus 109475 Chordata Chordata 84.3 5.92e-18   NR XP_049637544.1 109475 g27459 i0 67.3 107.981818181818 55 18 100 0 1 165 75 129 XP_049637544.1 LOW QUALITY PROTEIN: YEATS domain-containing protein 4-like [Suncus etruscus] diamond 17817 84.7 0.995277449822904 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Suncus Suncus etruscus
29411325 29411325 PRJNA330616_P_NODE_18309_length_196_cov_5.387755_g17900_i0 PRJNA330616 18309 196 5.387755 10.5599998 Bombina bombina 8345 Chordata Chordata 65.5 8.46e-12   NR XP_053562510.1 8345 g17900 i0 76.2 1.92857142857143 42 10 64.3 0 71 196 1 42 XP_053562510.1 60S acidic ribosomal protein P2-like [Bombina bombina] diamond 378 65.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
30060155 30060155 PRJNA330616_P_NODE_21291_length_183_cov_1.522388_g20882_i0 PRJNA330616 21291 183 1.522388 2.78597004 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 40.8 0.0427   NR NP_001087192.1 8355 g20882 i0 64.2 3.57377049180328 53 13 83.6 2 182 30 81 129 NP_001087192.1 ribosomal protein L24 L homeolog [Xenopus laevis] diamond 654 41.2 0.990291262135922 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
30313601 30313601 PRJNA330616_P_NODE_8032_length_293_cov_1.045082_g7623_i0 PRJNA330616 8032 293 1.045082 3.06209026 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 7.22e-25   NR XP_039269693.1 7725 g7623 i0 66.2 7.55631399317406 74 25 75.8 0 279 58 92 165 XP_039269693.1 60S ribosomal protein L12-like [Styela clava] diamond 2214 101 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
31116983 31116983 PRJNA330616_P_NODE_13855_length_223_cov_3.126437_g13446_i0 PRJNA330616 13855 223 3.126437 6.97195451 Hyla sarda 327740 Chordata Chordata 57.8 8.73e-8   NR XP_056409683.1 327740 g13446 i0 54.4 0.766816143497758 57 20 75.3 3 168 1 184 235 XP_056409683.1 uncharacterized protein LOC130331736 [Hyla sarda] diamond 171 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
31718137 31718137 PRJNA330616_P_NODE_27957_length_165_cov_0.879310_g27548_i0 PRJNA330616 27957 165 0.87931 1.4508615 Staurois parvus 386267 Chordata Chordata 42 0.00379   NR CAI9540006.1 386267 g27548 i0 52.9 0.618181818181818 34 16 61.8 0 5 106 3 36 CAI9540006.1 unnamed protein product, partial [Staurois parvus] diamond 102 42 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
31830120 31830120 PRJNA330616_P_NODE_28937_length_164_cov_0.886957_g28528_i0 PRJNA330616 28937 164 0.886957 1.45460948 Lepidosauria 8504 Chordata Chordata 42 0.0238   NR XP_014380302.1 38654 g28528 i0 43.9 7.53658536585366 41 23 75 0 149 27 246 286 XP_014380302.1 solute carrier family 35 member F6 isoform X2 [Alligator sinensis] diamond 1236 42 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator sinensis
32178553 32178553 PRJNA330616_P_NODE_9378_length_271_cov_1.900901_g8969_i0 PRJNA330616 9378 271 1.900901 5.15144171 Metazoa 33208 Chordata Chordata 144 1.2699999999999999e-42   NR AFM91059.1 7868 g8969 i0 82.9 96.0885608856089 82 14 90.8 0 269 24 35 116 AFM91059.1 40S ribosomal protein S20 isoform 2 [Callorhinchus milii] diamond 26040 145 0.993103448275862 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
32382547 32382547 PRJNA330616_P_NODE_25219_length_168_cov_1.033613_g24810_i0 PRJNA330616 25219 168 1.033613 1.73646984 Bufotes viridis 30338 Chordata Chordata 43.5 0.0071   NR CAK8629749.1 30338 g24810 i0 48.6 0.625 35 18 62.5 0 5 109 329 363 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 105 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;