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contig_metadata

34 rows where analysis = "diamond", bioproject = "PRJNA330616" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 34 ✖

tax_kingdom 1

bioproject 1

  • PRJNA330616 · 34 ✖

analysis 1

  • diamond · 34 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8042989 8042989 PRJNA330616_P_NODE_25607_length_167_cov_0.864407_g25198_i0 PRJNA330616 25607 167 0.864407 1.44355969 uncultured Frankineae bacterium 437475 Bacteria Bacteria 107 1.36e-25   NR CAA9320477.1 437475 g25198 i0 98.2 0.988023952095808 55 1 98.8 0 2 166 331 385 CAA9320477.1 MAG: NADH-ubiquinone oxidoreductase chain H, partial [uncultured Frankineae bacterium] diamond 165 107 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales     uncultured Frankineae bacterium
13143443 13143443 PRJNA330616_P_NODE_8051_length_292_cov_2.748971_g7642_i0 PRJNA330616 8051 292 2.748971 8.02699532 Schumannella sp. 1871187 Bacteria Bacteria 184 5.16e-56   NR MCU1418809.1 1871187 g7642 i0 95.9 0.996575342465753 97 4 99.7 0 1 291 110 206 MCU1418809.1 ribosomal protein [Schumannella sp.] diamond 291 184 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Schumannella Schumannella sp.
13822836 13822836 PRJNA330616_P_NODE_28131_length_165_cov_0.879310_g27722_i0 PRJNA330616 28131 165 0.87931 1.4508615 Nocardia harenae 358707 Bacteria Bacteria 114 1.07e-27   NR WP_067654535.1 358707 g27722 i0 88.9 5.89090909090909 54 6 98.2 0 3 164 442 495 WP_067654535.1 valine--tRNA ligase [Nocardia harenae] diamond 972 114 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia harenae
18920842 18920842 PRJNA330616_P_NODE_26235_length_167_cov_0.864407_g25826_i0 PRJNA330616 26235 167 0.864407 1.44355969 Leifsonia virtsii 3035915 Bacteria Bacteria 97.8 4.94e-24   NR WP_301218118.1 3035915 g25826 i0 90.9 0.988023952095808 55 5 98.8 0 2 166 32 86 WP_301218118.1 hemerythrin domain-containing protein [Leifsonia virtsii] diamond 165 97.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leifsonia Leifsonia virtsii
22066245 22066245 PRJNA330616_P_NODE_31138_length_162_cov_0.902655_g30729_i0 PRJNA330616 31138 162 0.902655 1.4623011 Corynebacterium sp. HMSC27B11 1581065 Bacteria Bacteria 102 8.91e-24   NR WP_070761638.1 1581065 g30729 i0 90.7 1 54 5 100 0 1 162 647 700 WP_070761638.1 HAD-IC family P-type ATPase [Corynebacterium sp. HMSC27B11] diamond 162 102 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium sp. HMSC27B11
24615883 24615883 PRJNA330616_P_NODE_28780_length_164_cov_0.886957_g28371_i0 PRJNA330616 28780 164 0.886957 1.45460948 Aquipuribacter hungaricus 545624 Bacteria Bacteria 84 1.7e-18   NR WP_340291283.1 545624 g28371 i0 74.1 0.98780487804878 54 14 98.8 0 163 2 22 75 WP_340291283.1 MarR family winged helix-turn-helix transcriptional regulator, partial [Aquipuribacter hungaricus] diamond 162 84 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Aquipuribacter Aquipuribacter hungaricus
24615913 24615913 PRJNA330616_P_NODE_30420_length_163_cov_0.894737_g30011_i0 PRJNA330616 30420 163 0.894737 1.45842131 Actinoplanes sp. NBRC 1 1871 Bacteria Bacteria 98.6 2.66e-22   NR WP_285682459.1 3032202 g30011 i0 84.9 2.96319018404908 53 8 97.5 0 1 159 117 169 WP_285682459.1 peptidoglycan recognition protein [Actinoplanes sp. NBRC 103695] diamond 483 98.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes sp. NBRC 103695
26631476 26631476 PRJNA330616_P_NODE_29381_length_164_cov_0.886957_g28972_i0 PRJNA330616 29381 164 0.886957 1.45460948 Pilimelia columellifera 706574 Bacteria Bacteria 45.1 0.00198   NR WP_344174253.1 706574 g28972 i0 58.8 0.621951219512195 34 14 62.2 0 35 136 181 214 WP_344174253.1 amino acid adenylation domain-containing protein, partial [Pilimelia columellifera] diamond 102 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Pilimelia Pilimelia columellifera
26726037 26726037 PRJNA330616_P_NODE_28261_length_165_cov_0.879310_g27852_i0 PRJNA330616 28261 165 0.87931 1.4508615 Brevibacterium 1696 Bacteria Bacteria 73.2 4.83e-14   NR WP_061943377.1 1696 g27852 i0 100 0.727272727272727 40 0 72.7 0 121 2 1 40 WP_061943377.1 MULTISPECIES: serine O-acetyltransferase EpsC [Brevibacterium] diamond 120 73.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium  
26933701 26933701 PRJNA330616_P_NODE_32502_length_161_cov_0.910714_g32093_i0 PRJNA330616 32502 161 0.910714 1.46624954 Bacteria 2 Bacteria Bacteria 105 3.4600000000000005e-27   NR WP_331837212.1 1773 g32093 i0 88.7 8.88819875776398 53 6 98.8 0 161 3 24 76 WP_331837212.1 hypothetical protein, partial [Mycobacterium tuberculosis] diamond 1431 106 0.990566037735849 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis
27106066 27106066 PRJNA330616_P_NODE_30062_length_163_cov_0.894737_g29653_i0 PRJNA330616 30062 163 0.894737 1.45842131 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 51.6 9.41e-6   NR MFN8039200.1 2201156 g29653 i0 46.3 0.993865030674847 54 29 99.4 0 162 1 38 91 MFN8039200.1 ATP-binding protein [Acidimicrobiales bacterium] diamond 162 51.6 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
28022318 28022318 PRJNA330616_P_NODE_24065_length_172_cov_1.658537_g23656_i0 PRJNA330616 24065 172 1.658537 2.85268364 Schumannella sp. 1871187 Bacteria Bacteria 93.2 1.92e-23   NR MCU1418804.1 1871187 g23656 i0 91.1 1.95348837209302 56 5 97.7 0 171 4 6 61 MCU1418804.1 rpmC [Schumannella sp.] diamond 336 93.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Schumannella Schumannella sp.
28053613 28053613 PRJNA330616_P_NODE_13465_length_226_cov_1.847458_g13056_i0 PRJNA330616 13465 226 1.847458 4.17525508 Micromonospora humida 2809018 Bacteria Bacteria 43.1 0.0227   NR WP_377686447.1 2809018 g13056 i0 38.8 1.06194690265487 80 37 90.3 2 211 8 87 166 WP_377686447.1 NACHT domain-containing protein [Micromonospora humida] diamond 240 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora humida
28085220 28085220 PRJNA330616_P_NODE_19025_length_193_cov_1.416667_g18616_i0 PRJNA330616 19025 193 1.416667 2.73416731 Nonomuraea phyllanthi 2219224 Bacteria Bacteria 53.1 3.87e-6   NR KAB8180357.1 2219224 g18616 i0 58.5 0.637305699481865 41 17 63.7 0 188 66 203 243 KAB8180357.1 hypothetical protein FH608_051140, partial [Nonomuraea phyllanthi] diamond 123 53.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Nonomuraea Nonomuraea phyllanthi
28085225 28085225 PRJNA330616_P_NODE_28185_length_165_cov_0.879310_g27776_i0 PRJNA330616 28185 165 0.87931 1.4508615 Actinomycetota bacterium 2900548 Bacteria Bacteria 109 3.29e-26   NR MEY3397137.1 2900548 g27776 i0 100 0.981818181818182 54 0 98.2 0 163 2 286 339 MEY3397137.1 UDP-N-acetylmuramate--L-alanine ligase [Actinomycetota bacterium] diamond 162 109 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28450090 28450090 PRJNA330616_P_NODE_15226_length_214_cov_1.236364_g14817_i0 PRJNA330616 15226 214 1.236364 2.64581896 Actinomycetes 1760 Bacteria Bacteria 55.5 8.39e-7   NR EWM17318.1 345341 g14817 i0 38.6 3.75700934579439 70 43 98.1 0 4 213 386 455 EWM17318.1 beta-glucosidase [Kutzneria sp. 744] diamond 804 55.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Kutzneria Kutzneria sp. 744
28685411 28685411 PRJNA330616_P_NODE_31007_length_162_cov_0.902655_g30598_i0 PRJNA330616 31007 162 0.902655 1.4623011 unclassified Nocardiopsis 2649073 Bacteria Bacteria 40.4 0.0412   NR WP_406967906.1 2649073 g30598 i0 33.3 0.944444444444444 51 33 94.4 1 155 3 44 93 WP_406967906.1 MULTISPECIES: DUF4345 domain-containing protein [unclassified Nocardiopsis] diamond 153 40.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Nocardiopsidaceae Nocardiopsis  
29176315 29176315 PRJNA330616_P_NODE_27849_length_165_cov_0.879310_g27440_i0 PRJNA330616 27849 165 0.87931 1.4508615 Microlunatus 29404 Bacteria Bacteria 85.9 6.81e-18   NR WP_152363303.1 2594267 g27440 i0 75.9 1.96363636363636 54 12 98.2 1 163 2 246 298 WP_152363303.1 ABC transporter substrate-binding protein [Microlunatus speluncae] diamond 324 85.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus speluncae
29348375 29348375 PRJNA330616_P_NODE_27749_length_165_cov_0.879310_g27340_i0 PRJNA330616 27749 165 0.87931 1.4508615 Kocuria carniphila 262208 Bacteria Bacteria 77 4.36e-16   NR WP_129699388.1 262208 g27340 i0 64.3 1.01818181818182 56 19 100 1 165 1 10 65 WP_129699388.1 hypothetical protein [Kocuria carniphila] diamond 168 77 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria carniphila
29506037 29506037 PRJNA330616_P_NODE_29370_length_164_cov_0.886957_g28961_i0 PRJNA330616 29370 164 0.886957 1.45460948 Geodermatophilus ruber 504800 Bacteria Bacteria 87.8 6.26e-19   NR WP_091323803.1 504800 g28961 i0 82.7 1.88414634146341 52 9 95.1 0 164 9 280 331 WP_091323803.1 multicopper oxidase domain-containing protein [Geodermatophilus ruber] diamond 309 87.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus ruber
29790129 29790129 PRJNA330616_P_NODE_23311_length_175_cov_1.492063_g22902_i0 PRJNA330616 23311 175 1.492063 2.61111025 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 41.6 0.039   NR MEA2182870.1 2586742 g22902 i0 31.6 0.977142857142857 57 39 97.7 0 175 5 169 225 MEA2182870.1 RNA-directed polymerase [Solirubrobacteraceae bacterium] diamond 171 41.6 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
29979813 29979813 PRJNA330616_P_NODE_30871_length_162_cov_0.902655_g30462_i0 PRJNA330616 30871 162 0.902655 1.4623011 Candidatus Solirubrobacter pratensis 1298857 Bacteria Bacteria 63.5 5.55e-10   NR WP_028058400.1 1298857 g30462 i0 51 0.944444444444444 51 25 94.4 0 8 160 429 479 WP_028058400.1 DNA polymerase III subunit alpha [Candidatus Solirubrobacter pratensis] diamond 153 63.5 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae Solirubrobacter Candidatus Solirubrobacter pratensis
30091711 30091711 PRJNA330616_P_NODE_19252_length_192_cov_1.419580_g18843_i0 PRJNA330616 19252 192 1.41958 2.7255936 Bacillati 1783272 Bacteria Bacteria 58.5 5.04e-8   NR WP_062347635.1 354426 g18843 i0 60.8 2.4375 51 20 79.7 0 2 154 2454 2504 WP_062347635.1 non-ribosomal peptide synthetase [Herbidospora yilanensis] diamond 468 58.9 0.99320882852292 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Herbidospora Herbidospora yilanensis
30516931 30516931 PRJNA330616_P_NODE_25713_length_167_cov_0.864407_g25304_i0 PRJNA330616 25713 167 0.864407 1.44355969 Actinomycetota bacterium 2900548 Bacteria Bacteria 46.6 2.45e-4   NR MBS1889989.1 2900548 g25304 i0 47.6 0.754491017964072 42 22 75.4 0 39 164 87 128 MBS1889989.1 hypothetical protein [Actinomycetota bacterium] diamond 126 46.6 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30706424 30706424 PRJNA330616_P_NODE_29214_length_164_cov_0.886957_g28805_i0 PRJNA330616 29214 164 0.886957 1.45460948 Microlunatus sp. 39595 Bacteria Bacteria 65.5 9.49e-11   NR HVK34797.1 39595 g28805 i0 68.5 0.98780487804878 54 12 98.8 1 1 162 49 97 HVK34797.1 c-type cytochrome biogenesis protein CcsB [Microlunatus sp.] diamond 162 65.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus sp.
30896246 30896246 PRJNA330616_P_NODE_27714_length_165_cov_0.879310_g27305_i0 PRJNA330616 27714 165 0.87931 1.4508615 Saccharothrix sp. MB29 2873294 Bacteria Bacteria 41.6 0.034   NR MBY8847904.1 2873294 g27305 i0 39.7 1.05454545454545 58 28 96.4 2 7 165 265 320 MBY8847904.1 hypothetical protein [Saccharothrix sp. MB29] diamond 174 41.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharothrix Saccharothrix sp. MB29
31085687 31085687 PRJNA330616_P_NODE_12875_length_231_cov_1.120879_g12466_i0 PRJNA330616 12875 231 1.120879 2.58923049 Rhodococcus sp. B5 1161946 Bacteria Bacteria 43.5 0.0167   NR WP_213931778.1 2682847 g12466 i0 31.5 0.948051948051948 73 39 80.5 3 24 209 391 463 WP_213931778.1 flavin-containing monooxygenase [Rhodococcus sp. B50] diamond 219 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Rhodococcus Rhodococcus sp. B50
31545821 31545821 PRJNA330616_P_NODE_30096_length_163_cov_0.894737_g29687_i0 PRJNA330616 30096 163 0.894737 1.45842131 Bacteria 2 Bacteria Bacteria 62 1.47e-9   NR MFN0283066.1 2487580 g29687 i0 67.6 4.84049079754601 37 12 68.1 0 18 128 59 95 MFN0283066.1 D-hexose-6-phosphate mutarotase [Kineosporiaceae bacterium] diamond 789 62 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae   Kineosporiaceae bacterium
31560158 31560158 PRJNA330616_P_NODE_29836_length_163_cov_0.894737_g29427_i0 PRJNA330616 29836 163 0.894737 1.45842131 Cryobacterium suzukii 1259198 Bacteria Bacteria 85.9 3.74e-18   NR WP_134513708.1 1259198 g29427 i0 81.5 1.98773006134969 54 10 99.4 0 1 162 210 263 WP_134513708.1 ABC transporter permease [Cryobacterium suzukii] diamond 324 85.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Cryobacterium Cryobacterium suzukii
31591797 31591797 PRJNA330616_P_NODE_29396_length_164_cov_0.886957_g28987_i0 PRJNA330616 29396 164 0.886957 1.45460948 Kocuria sp. 1871328 Bacteria Bacteria 47.4 2.94e-4   NR WP_368660403.1 1871328 g28987 i0 45.5 1.00609756097561 55 29 98.8 1 162 1 88 142 WP_368660403.1 XRE family transcriptional regulator [Kocuria sp.] diamond 165 47.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria sp.
31844509 31844509 PRJNA330616_P_NODE_29357_length_164_cov_0.886957_g28948_i0 PRJNA330616 29357 164 0.886957 1.45460948 Williamsia muralis 85044 Bacteria Bacteria 114 1.48e-28   NR WP_116915265.1 85044 g28948 i0 98.1 0.98780487804878 54 1 98.8 0 2 163 144 197 WP_116915265.1 phosphotransferase family protein [Williamsia muralis] diamond 162 114 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Williamsia Williamsia muralis
32319553 32319553 PRJNA330616_P_NODE_11879_length_240_cov_1.335079_g11470_i0 PRJNA330616 11879 240 1.335079 3.2041896 Actinomycetota bacterium 2900548 Bacteria Bacteria 79 3.42e-15   NR NBT47305.1 2900548 g11470 i0 46.8 3.9 79 42 98.8 0 1 237 166 244 NBT47305.1 hypothetical protein [Actinomycetota bacterium] diamond 936 79 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32540975 32540975 PRJNA330616_P_NODE_19459_length_191_cov_1.436620_g19050_i0 PRJNA330616 19459 191 1.43662 2.7439442 Gordonia phthalatica 1136941 Bacteria Bacteria 43.9 0.00129   NR ALG86600.1 1136941 g19050 i0 42.4 1.42931937172775 59 29 84.8 1 188 27 26 84 ALG86600.1 hypothetical protein ACH46_04785 [Gordonia phthalatica] diamond 273 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia phthalatica
32698159 32698159 PRJNA330616_P_NODE_25800_length_167_cov_0.864407_g25391_i0 PRJNA330616 25800 167 0.864407 1.44355969 Ilumatobacteraceae bacterium 2497619 Bacteria Bacteria 112 3.75e-27   NR MBJ7489815.1 2497619 g25391 i0 100 0.988023952095808 55 0 98.8 0 167 3 584 638 MBJ7489815.1 excinuclease ABC subunit UvrB [Ilumatobacteraceae bacterium] diamond 165 112 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae   Ilumatobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;