RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA326068" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA326068 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3619880 3619880 PRJNA326068_P_NODE_7363_length_392_cov_3.303030_g6428_i0 PRJNA326068 7363 392 3.30303 12.9478776 Sphagnum balticum 128184 Plants Plants 152 6.19e-45   NR CAM6001409.1 128184 g6428 i0 82.6 0.658163265306122 86 15 65.8 0 391 134 45 130 CAM6001409.1 unnamed protein product [Sphagnum balticum] diamond 258 152 1 Eukaryota Embryophyta Viridiplantae Streptophyta Sphagnopsida Sphagnales Sphagnaceae Sphagnum Sphagnum balticum
32051780 32051780 PRJNA326068_P_NODE_12718_length_257_cov_2.114035_g11755_i0 PRJNA326068 12718 257 2.114035 5.43306995 root 1 Root_unresolved Root_unresolved 99.8 5.24e-25   NR CAK9251875.1 128206 g11755 i0 73.1 2.2295719844358 67 18 78.2 0 56 256 1 67 CAK9251875.1 unnamed protein product [Sphagnum jensenii] diamond 573 99.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Sphagnopsida Sphagnales Sphagnaceae Sphagnum Sphagnum jensenii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;