contig_metadata
10 rows where analysis = "diamond", bioproject = "PRJNA326068" and tax_phylum = "Pseudomonadota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19515329 | 19515329 | PRJNA326068_P_NODE_8836_length_347_cov_1.833333_g7882_i0 | PRJNA326068 | 8836 | 347 | 1.833333 | 6.36166551 | Aquincola | 391952 | Bacteria | Bacteria | 124 | 9.61e-34 | NR | WP_046112008.1 | 391952 | g7882 | i0 | 87.3 | 0.68299711815562 | 79 | 6 | 64.8 | 1 | 225 | 1 | 21 | 99 | WP_046112008.1 MULTISPECIES: hypothetical protein [Aquincola] | diamond | 237 | 124 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Burkholderiales | Sphaerotilaceae | Aquincola | |||
| 27137372 | 27137372 | PRJNA326068_P_NODE_5802_length_457_cov_9.481308_g4940_i0 | PRJNA326068 | 5802 | 457 | 9.481308 | 43.32957756 | Sphingomonadaceae bacterium PASS1 | 2015579 | Bacteria | Bacteria | 120 | 4.4899999999999997e-32 | NR | OYU02204.1 | 2015579 | g4940 | i0 | 70.6 | 0.557986870897155 | 85 | 25 | 55.8 | 0 | 293 | 39 | 16 | 100 | OYU02204.1 MAG: hypothetical protein CFE36_06940 [Sphingomonadaceae bacterium PASS1] | diamond | 255 | 120 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonadaceae bacterium PASS1 | |||
| 27927462 | 27927462 | PRJNA326068_P_NODE_11065_length_290_cov_15.045977_g10104_i0 | PRJNA326068 | 11065 | 290 | 15.045977 | 43.6333333 | Sphingomonadaceae bacterium PASS1 | 2015579 | Bacteria | Bacteria | 118 | 3.28e-32 | NR | OYU02204.1 | 2015579 | g10104 | i0 | 71.8 | 0.879310344827586 | 85 | 24 | 87.9 | 0 | 6 | 260 | 16 | 100 | OYU02204.1 MAG: hypothetical protein CFE36_06940 [Sphingomonadaceae bacterium PASS1] | diamond | 255 | 118 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonadaceae bacterium PASS1 | |||
| 28053608 | 28053608 | PRJNA326068_P_NODE_12585_length_259_cov_3.139130_g11622_i0 | PRJNA326068 | 12585 | 259 | 3.13913 | 8.1303467 | Novosphingobium sp. | 1874826 | Bacteria | Bacteria | 65.5 | 2.43e-11 | NR | WP_296676571.1 | 1874826 | g11622 | i0 | 68.8 | 0.555984555984556 | 48 | 15 | 55.6 | 0 | 108 | 251 | 40 | 87 | WP_296676571.1 hypothetical protein [Novosphingobium sp.] | diamond | 144 | 65.5 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Novosphingobium | Novosphingobium sp. | ||
| 28306319 | 28306319 | PRJNA326068_P_NODE_9706_length_324_cov_4.813559_g8747_i0 | PRJNA326068 | 9706 | 324 | 4.813559 | 15.59593116 | Klebsiella pneumoniae | 573 | Bacteria | Bacteria | 85.1 | 9.33e-19 | NR | WP_416532572.1 | 573 | g8747 | i0 | 79.2 | 1.93518518518519 | 53 | 11 | 49.1 | 0 | 160 | 2 | 53 | 105 | WP_416532572.1 hypothetical protein, partial [Klebsiella pneumoniae] | diamond | 627 | 85.1 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Klebsiella | Klebsiella pneumoniae | ||
| 28906005 | 28906005 | PRJNA326068_P_NODE_19788_length_154_cov_1.176000_g18825_i0 | PRJNA326068 | 19788 | 154 | 1.176 | 1.81104 | Bradyrhizobium | 374 | Bacteria | Bacteria | 86.3 | 3.37e-18 | NR | WP_043855259.1 | 374 | g18825 | i0 | 84 | 0.974025974025974 | 50 | 8 | 97.4 | 0 | 152 | 3 | 90 | 139 | WP_043855259.1 MULTISPECIES: hypothetical protein [Bradyrhizobium] | diamond | 150 | 86.3 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | |||
| 30028841 | 30028841 | PRJNA326068_P_NODE_11191_length_288_cov_2.332046_g10229_i0 | PRJNA326068 | 11191 | 288 | 2.332046 | 6.71629248 | Alphaproteobacteria | 28211 | Bacteria | Bacteria | 45.8 | 0.00525 | NR | MBU6497845.1 | 2026786 | g10229 | i0 | 46.2 | 3.25 | 52 | 16 | 54.2 | 1 | 288 | 133 | 493 | 532 | MBU6497845.1 cytochrome c oxidase subunit I [Rhodospirillales bacterium] | diamond | 936 | 45.8 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Rhodospirillales | Rhodospirillales bacterium | ||||
| 30042934 | 30042934 | PRJNA326068_P_NODE_19411_length_159_cov_1.076923_g18448_i0 | PRJNA326068 | 19411 | 159 | 1.076923 | 1.71230757 | Bradyrhizobium roseum | 3056648 | Bacteria | Bacteria | 55.5 | 2.83e-7 | NR | WP_300945270.1 | 3056648 | g18448 | i0 | 92.6 | 1.0188679245283 | 27 | 2 | 50.9 | 0 | 77 | 157 | 1 | 27 | WP_300945270.1 F0F1 ATP synthase subunit A [Bradyrhizobium roseum] | diamond | 162 | 55.5 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bradyrhizobium roseum | ||
| 30200729 | 30200729 | PRJNA326068_P_NODE_18052_length_180_cov_1.536424_g17089_i0 | PRJNA326068 | 18052 | 180 | 1.536424 | 2.7655632 | Rhizobacter sp. Root4 | 1909292 | Bacteria | Bacteria | 56.2 | 2.34e-8 | NR | WP_056465771.1 | 1736528 | g17089 | i0 | 58.3 | 1 | 60 | 22 | 100 | 1 | 180 | 1 | 40 | 96 | WP_056465771.1 hypothetical protein [Rhizobacter sp. Root404] | diamond | 180 | 56.2 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Burkholderiales | Rhizobacter | Rhizobacter sp. Root404 | |||
| 32824254 | 32824254 | PRJNA326068_P_NODE_16940_length_199_cov_1.711765_g15977_i0 | PRJNA326068 | 16940 | 199 | 1.711765 | 3.40641235 | Bradyrhizobium japonicum | 375 | Bacteria | Bacteria | 42 | 0.00711 | NR | WP_024342609.1 | 375 | g15977 | i0 | 60.7 | 0.693467336683417 | 28 | 11 | 42.2 | 0 | 184 | 101 | 52 | 79 | WP_024342609.1 PilZ domain-containing protein [Bradyrhizobium japonicum] | diamond | 138 | 42 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Hyphomicrobiales | Nitrobacteraceae | Bradyrhizobium | Bradyrhizobium japonicum |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;