RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA326068" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA326068 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23341316 23341316 PRJNA326068_P_NODE_11679_length_278_cov_2.357430_g10717_i0 PRJNA326068 11679 278 2.35743 6.5536554 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 158 6.449999999999999e-45   NR OQS04692.1 74557 g10717 i0 84.8 5.9568345323741 92 14 99.3 0 3 278 10 101 OQS04692.1 aspartyl/Asparaginyl beta-hydroxylase [Thraustotheca clavata] diamond 1656 159 0.993710691823899 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
27011230 27011230 PRJNA326068_P_NODE_20002_length_151_cov_2.950820_g19039_i0 PRJNA326068 20002 151 2.95082 4.4557382 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.00209   NR TYZ63537.1 1485010 g19039 i0 47.4 0.754966887417219 38 20 75.5 0 24 137 233 270 TYZ63537.1 hypothetical protein PybrP1_010177 [[Pythium] brassicae (nom. inval.)] diamond 114 44.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
30881726 30881726 PRJNA326068_P_NODE_5114_length_488_cov_3.342048_g4296_i0 PRJNA326068 5114 488 3.342048 16.30919424 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 161 5.939999999999999e-43   NR XP_024573476.1 4781 g4296 i0 64.7 8.40368852459016 116 41 71.3 0 472 125 533 648 XP_024573476.1 dead deah box helicase [Plasmopara halstedii] diamond 4101 162 0.993827160493827 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;