RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA326068" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA326068 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26726022 26726022 PRJNA326068_P_NODE_13681_length_239_cov_2.771429_g12718_i0 PRJNA326068 13681 239 2.771429 6.62371531 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 55.5 1.56e-7   NR KAH3756789.1 1580589 g12718 i0 80.6 1.35564853556485 36 7 45.2 0 109 2 36 71 KAH3756789.1 ribosomal protein L35 [Pelomyxa schiedti] diamond 324 55.5 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
28481511 28481511 PRJNA326068_P_NODE_19686_length_155_cov_1.849206_g18723_i0 PRJNA326068 19686 155 1.849206 2.8662693 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 65.9 5.58e-12   NR KYR01989.1 361077 g18723 i0 67.4 8.38064516129032 46 15 89 0 16 153 4 49 KYR01989.1 S60 ribosomal protein L32 [Tieghemostelium lacteum] diamond 1299 65.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
32761225 32761225 PRJNA326068_P_NODE_15800_length_211_cov_2.692308_g14837_i0 PRJNA326068 15800 211 2.692308 5.68076988 Dictyostelium discoideum AX4 352472 Evosea other_Eukaryota 50.1 3.24e-5   NR XP_647082.1 352472 g14837 i0 65.8 0.540284360189573 38 13 54 0 27 140 1 38 XP_647082.1 hypothetical protein DDB_G0268264 [Dictyostelium discoideum AX4] diamond 114 50.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;