RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA322517" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA322517 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26947922 26947922 PRJNA322517_P_NODE_5982_length_163_cov_1.342105_g5960_i0 PRJNA322517 5982 163 1.342105 2.18763115 Caldilinea sp. 2293560 Bacteria Bacteria 52.8 3.72e-6   NR MCL4826486.1 2293560 g5960 i0 55.8 1.87730061349693 52 21 93.9 2 8 160 277 327 MCL4826486.1 DUF4397 domain-containing protein [Caldilinea sp.] diamond 306 52.8 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae Caldilinea Caldilinea sp.
29821600 29821600 PRJNA322517_P_NODE_4791_length_178_cov_1.581395_g4769_i0 PRJNA322517 4791 178 1.581395 2.8148831 Chloroflexota bacterium 2026724 Bacteria Bacteria 60.1 1.19e-8   NR NWF69361.1 2026724 g4769 i0 63.3 1.63483146067416 49 17 82.6 1 147 1 493 540 NWF69361.1 fasciclin domain-containing protein [Chloroflexota bacterium] diamond 291 60.1 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;