RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA322517" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA322517 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28337934 28337934 PRJNA322517_P_NODE_4246_length_190_cov_2.851064_g4224_i0 PRJNA322517 4246 190 2.851064 5.4170216 Cubamyces sp. BRFM 1775 1513325 Fungi Fungi 101 3.35e-23   NR KAI0333315.1 1513325 g4224 i0 96 3.15789473684211 50 2 78.9 0 190 41 843 892 KAI0333315.1 DNA repair helicase [Cubamyces sp. BRFM 1775] diamond 600 101 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Polyporaceae Cubamyces Cubamyces sp. BRFM 1775
29442737 29442737 PRJNA322517_P_NODE_6350_length_161_cov_0.910714_g6328_i0 PRJNA322517 6350 161 0.910714 1.46624954 Sporobolomyces koalae 500713 Fungi Fungi 44.3 0.00349   NR GAA5929405.1 500713 g6328 i0 78.3 0.428571428571429 23 5 42.9 0 86 154 129 151 GAA5929405.1 hypothetical protein JCM15063_004140 [Sporobolomyces koalae] diamond 69 44.3 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Sporobolomyces Sporobolomyces koalae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;