RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA322517" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA322517 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27895759 27895759 PRJNA322517_P_NODE_4585_length_183_cov_1.007463_g4563_i0 PRJNA322517 4585 183 1.007463 1.84365729 Nesterenkonia cremea 1882340 Bacteria Bacteria 132 5.11e-35   NR WP_229658688.1 1882340 g4563 i0 98.3 0.983606557377049 60 1 98.4 0 181 2 156 215 WP_229658688.1 extracellular solute-binding protein [Nesterenkonia cremea] diamond 180 132 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Nesterenkonia Nesterenkonia cremea
28734145 28734145 PRJNA322517_P_NODE_3427_length_223_cov_1.172414_g3405_i0 PRJNA322517 3427 223 1.172414 2.61448322 Actinomycetota 201174 Bacteria Bacteria 42.4 0.0404   NR WP_344774255.1 993084 g3405 i0 39.1 1.26457399103139 46 27 61.9 1 32 169 447 491 WP_344774255.1 ArnT family glycosyltransferase [Gryllotalpicola kribbensis] diamond 282 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Gryllotalpicola Gryllotalpicola kribbensis
31971129 31971129 PRJNA322517_P_NODE_4958_length_175_cov_1.214286_g4936_i0 PRJNA322517 4958 175 1.214286 2.1250005 Candidatus Nanopelagicales bacterium 2518612 Bacteria Bacteria 56.2 2.45e-7   NR MDC1474477.1 2518612 g4936 i0 57.1 2.58857142857143 49 21 84 0 173 27 1 49 MDC1474477.1 hypothetical protein [Candidatus Nanopelagicales bacterium] diamond 453 56.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales     Candidatus Nanopelagicales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;