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contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA316313" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 16 ✖

tax_kingdom 1

bioproject 1

  • PRJNA316313 · 16 ✖

analysis 1

  • diamond · 16 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26870733 26870733 PRJNA316313_P_NODE_210621_length_187_cov_3.286667_g209235_i0 PRJNA316313 210621 187 3.286667 6.14606729 Pseudomonadati 3379134 Bacteria Bacteria 93.2 1.13e-20   NR WP_198015318.1 42252 g209235 i0 79 7.9572192513369 62 5 99.5 1 186 1 221 274 WP_198015318.1 polysaccharide biosynthesis/export family protein [Nitratidesulfovibrio termitidis] diamond 1488 93.6 0.995726495726496 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio termitidis
27801205 27801205 PRJNA316313_P_NODE_392684_length_154_cov_2.452991_g391298_i0 PRJNA316313 392684 154 2.452991 3.77760614 Desulfurivibrio sp. C 2093369 Bacteria Bacteria 86.3 4.9e-18   NR WP_395493285.1 3374371 g391298 i0 87.8 1.92857142857143 49 6 95.5 0 3 149 792 840 WP_395493285.1 ATP-binding protein [Desulfurivibrio sp. C05AmB] diamond 297 86.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfurivibrio Desulfurivibrio sp. C05AmB
28937803 28937803 PRJNA316313_P_NODE_202788_length_187_cov_3.413333_g201402_i0 PRJNA316313 202788 187 3.413333 6.38293271 Syntrophaceae bacterium 2052184 Bacteria Bacteria 53.1 3.73e-6   NR MDD3474045.1 2052184 g201402 i0 92 0.401069518716578 25 2 40.1 0 75 1 5 29 MDD3474045.1 glycosyltransferase family 1 protein [Syntrophaceae bacterium] diamond 75 53.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae   Syntrophaceae bacterium
29302397 29302397 PRJNA316313_P_NODE_316429_length_187_cov_2.293333_g315043_i0 PRJNA316313 316429 187 2.293333 4.28853271 Bacteria 2 Bacteria Bacteria 48.5 1.62e-4   NR HAJ25753.1 48412 g315043 i0 96 8.21390374331551 25 1 40.1 0 187 113 216 240 HAJ25753.1 nucleotide sugar dehydrogenase [Syntrophus sp. (in: bacteria)] diamond 1536 48.9 0.991820040899796 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus sp. (in: bacteria)
29631998 29631998 PRJNA316313_P_NODE_251130_length_187_cov_2.840000_g249744_i0 PRJNA316313 251130 187 2.84 5.3108 Desulfovibrio sp. 6_1_46AFAA 665942 Bacteria Bacteria 52.4 7.05e-6   NR WP_009302255.1 665942 g249744 i0 42.9 2.18181818181818 77 28 97.9 1 184 2 338 414 WP_009302255.1 Ig-like domain-containing protein, partial [Desulfovibrio sp. 6_1_46AFAA] diamond 408 52.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio sp. 6_1_46AFAA
29632046 29632046 PRJNA316313_P_NODE_498970_length_150_cov_3.469027_g497584_i0 PRJNA316313 498970 150 3.469027 5.2035405 Syntrophaceae bacterium 2052184 Bacteria Bacteria 88.2 1.03e-18   NR MDD3471670.1 2052184 g497584 i0 84.9 1.06 53 5 100 1 150 1 335 387 MDD3471670.1 asparagine synthase (glutamine-hydrolyzing) [Syntrophaceae bacterium] diamond 159 88.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae   Syntrophaceae bacterium
29790082 29790082 PRJNA316313_P_NODE_446691_length_151_cov_3.728070_g445305_i0 PRJNA316313 446691 151 3.72807 5.6293857 Deferrisoma camini 1035120 Bacteria Bacteria 45.4 0.00119   NR WP_084319572.1 1035120 g445305 i0 56.7 1.8476821192053 30 13 59.6 0 91 2 22 51 WP_084319572.1 TIR domain-containing protein [Deferrisoma camini] diamond 279 45.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Deferrisomatia Deferrisomatales Deferrisomataceae Deferrisoma Deferrisoma camini
29979751 29979751 PRJNA316313_P_NODE_424151_length_151_cov_4.684211_g422765_i0 PRJNA316313 424151 151 4.684211 7.07315861 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 56.2 1.77e-7   NR MEW5914430.1 2202153 g422765 i0 59.3 1.0728476821192101 54 18 99.3 2 150 1 152 205 MEW5914430.1 SAM-dependent methyltransferase [Thermodesulfobacteriota bacterium] diamond 162 56.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
30154827 30154827 PRJNA316313_P_NODE_62272_length_242_cov_2.921951_g60886_i0 PRJNA316313 62272 242 2.921951 7.07112142 Pseudomonadati 3379134 Bacteria Bacteria 134 2.55e-34   NR WP_374290838.1 876 g60886 i0 82.5 5.9504132231405 80 14 99.2 0 1 240 328 407 WP_374290838.1 ATP-binding protein [Desulfovibrio desulfuricans] diamond 1440 135 0.992592592592593 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans
30485369 30485369 PRJNA316313_P_NODE_82213_length_220_cov_3.469945_g80827_i0 PRJNA316313 82213 220 3.469945 7.633879 Desulfurivibrio sp. C 2093369 Bacteria Bacteria 128 1.73e-32   NR WP_395493285.1 3374371 g80827 i0 83.3 1.93636363636364 72 12 98.2 0 3 218 716 787 WP_395493285.1 ATP-binding protein [Desulfurivibrio sp. C05AmB] diamond 426 128 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfurivibrio Desulfurivibrio sp. C05AmB
30516871 30516871 PRJNA316313_P_NODE_39993_length_282_cov_3.200000_g38611_i0 PRJNA316313 39993 282 3.2 9.024 Desulfobotulus mexicanus 2586642 Bacteria Bacteria 51.6 3.87e-5   NR WP_342774313.1 2586642 g38611 i0 96 3.19148936170213 25 1 26.6 0 207 281 1 25 WP_342774313.1 glucose-1-phosphate thymidylyltransferase RfbA [Desulfobotulus mexicanus] diamond 900 51.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae Desulfobotulus Desulfobotulus mexicanus
30643067 30643067 PRJNA316313_P_NODE_157173_length_187_cov_4.406667_g155787_i0 PRJNA316313 157173 187 4.406667 8.24046729 Desulfovibrio 872 Bacteria Bacteria 47.8 2.94e-4   NR WP_195840930.1 872 g155787 i0 83.3 0.385026737967914 24 4 38.5 0 114 185 489 512 WP_195840930.1 MULTISPECIES: sigma 54-interacting transcriptional regulator [Desulfovibrio] diamond 72 47.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio  
30864309 30864309 PRJNA316313_P_NODE_343654_length_182_cov_4.572414_g342268_i0 PRJNA316313 343654 182 4.572414 8.32179348 Candidatus Adiutrix sp. 2872164 Bacteria Bacteria 48.9 1.09e-4   NR MDR1045021.1 2872164 g342268 i0 50.9 0.873626373626374 53 26 87.4 0 166 8 15 67 MDR1045021.1 tetratricopeptide repeat protein [Candidatus Adiutrix sp.] diamond 159 48.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Candidatus Adiutricales Candidatus Adiutricaceae Candidatus Adiutrix Candidatus Adiutrix sp.
30896133 30896133 PRJNA316313_P_NODE_176634_length_187_cov_3.866667_g175248_i0 PRJNA316313 176634 187 3.866667 7.23066729 Geobacter sp. 46610 Bacteria Bacteria 46.2 9.71e-4   NR MFA6823724.1 46610 g175248 i0 95.8 0.385026737967914 24 1 38.5 0 114 185 24 47 MFA6823724.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Geobacter sp.] diamond 72 46.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp.
30959259 30959259 PRJNA316313_P_NODE_333134_length_186_cov_3.255034_g331748_i0 PRJNA316313 333134 186 3.255034 6.05436324 Syntrophaceae bacterium 2052184 Bacteria Bacteria 47.4 4.17e-4   NR MDD3472921.1 2052184 g331748 i0 76 0.806451612903226 25 6 40.3 0 186 112 119 143 MDD3472921.1 DUF6178 family protein [Syntrophaceae bacterium] diamond 150 47.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae   Syntrophaceae bacterium
32824160 32824160 PRJNA316313_P_NODE_213420_length_187_cov_3.240000_g212034_i0 PRJNA316313 213420 187 3.24 6.0588 Desulfobaccales bacterium 3064668 Bacteria Bacteria 43.1 0.0133   NR MFA5110773.1 3064668 g212034 i0 41 0.978609625668449 61 30 88.2 1 1 165 44 104 MFA5110773.1 hypothetical protein [Desulfobaccales bacterium] diamond 183 43.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobaccia Desulfobaccales     Desulfobaccales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;