RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA316313" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA316313 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27327503 27327503 PRJNA316313_P_NODE_471643_length_151_cov_3.026316_g470257_i0 PRJNA316313 471643 151 3.026316 4.56973716 Rhodothermales bacterium 2306054 Bacteria Bacteria 43.5 0.0054   NR MBE2186724.1 2306054 g470257 i0 73.1 0.516556291390728 26 7 51.7 0 149 72 141 166 MBE2186724.1 DUF4249 family protein [Rhodothermales bacterium] diamond 78 43.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
31148333 31148333 PRJNA316313_P_NODE_320755_length_187_cov_2.233333_g319369_i0 PRJNA316313 320755 187 2.233333 4.17633271 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 52.4 1.29e-6   NR HEX9952685.1 2838334 g319369 i0 46.2 2.0855614973262 65 31 97.9 1 3 185 41 105 HEX9952685.1 hypothetical protein [Rubricoccaceae bacterium] diamond 390 52.4 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
32603750 32603750 PRJNA316313_P_NODE_202980_length_187_cov_3.406667_g201594_i0 PRJNA316313 202980 187 3.406667 6.37046729 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 43.9 0.00686   NR HEX8299157.1 2838334 g201594 i0 80 0.401069518716578 25 5 40.1 0 3 77 761 785 HEX8299157.1 BamA/TamA family outer membrane protein [Rubricoccaceae bacterium] diamond 75 43.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;