RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA316313" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA316313 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26694563 26694563 PRJNA316313_P_NODE_226581_length_187_cov_3.093333_g225195_i0 PRJNA316313 226581 187 3.093333 5.78453271 Hyaloperonospora arabidopsidis Emoy2 559515 SAR_Eukaryotes SAR_Eukaryotes 56.6 2.05e-7   NR BAP68992.1 559515 g225195 i0 96 0.401069518716578 25 1 40.1 0 2 76 90 114 BAP68992.1 RxLR effector candidate protein [Hyaloperonospora arabidopsidis Emoy2] diamond 75 56.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora arabidopsidis
29680963 29680963 PRJNA316313_P_NODE_229970_length_187_cov_3.053333_g228584_i0 PRJNA316313 229970 187 3.053333 5.70973271 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 56.6 2.23e-7   NR KAG3038693.1 29920 g228584 i0 88 1.20320855614973 25 3 40.1 0 187 113 277 301 KAG3038693.1 hypothetical protein PC121_g23873 [Phytophthora cactorum] diamond 225 56.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
31116923 31116923 PRJNA316313_P_NODE_325255_length_187_cov_2.120000_g323869_i0 PRJNA316313 325255 187 2.12 3.9644 Peronospora destructor 86335 SAR_Eukaryotes SAR_Eukaryotes 61.2 5.18e-9   NR CAI5731156.1 86335 g323869 i0 48 1.20320855614973 75 26 99.5 1 186 1 139 213 CAI5731156.1 unnamed protein product [Peronospora destructor] diamond 225 61.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora destructor
31925143 31925143 PRJNA316313_P_NODE_265877_length_187_cov_2.620000_g264491_i0 PRJNA316313 265877 187 2.62 4.8994 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 48.1 2.15e-4   NR KAG6970755.1 29920 g264491 i0 95.8 6.36898395721925 24 1 38.5 0 114 185 243 266 KAG6970755.1 hypothetical protein JG687_00002455 [Phytophthora cactorum] diamond 1191 48.5 0.991752577319588 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;