RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA316313" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA316313 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27660695 27660695 PRJNA316313_P_NODE_284144_length_187_cov_2.533333_g282758_i0 PRJNA316313 284144 187 2.533333 4.73733271 Metazoa 33208 Mollusca Mollusca 52.8 5.17e-6   NR XP_033739830.1 6579 g282758 i0 92 28.475935828877 25 2 40.1 0 113 187 123 147 XP_033739830.1 tyrosine--tRNA ligase, cytoplasmic-like [Pecten maximus] diamond 5325 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Pecten Pecten maximus
28400997 28400997 PRJNA316313_P_NODE_492666_length_150_cov_4.123894_g491280_i0 PRJNA316313 492666 150 4.123894 6.185841 Dreissena polymorpha 45954 Mollusca Mollusca 48.1 9.06e-5   NR KAH3800002.1 45954 g491280 i0 84 0.5 25 4 50 0 75 149 70 94 KAH3800002.1 hypothetical protein DPMN_153626 [Dreissena polymorpha] diamond 75 48.1 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha
29095732 29095732 PRJNA316313_P_NODE_374128_length_163_cov_6.992063_g372742_i0 PRJNA316313 374128 163 6.992063 11.39706269 Lymnaea stagnalis 6523 Mollusca Mollusca 41.2 0.0459   NR CAL1538258.1 6523 g372742 i0 42 0.920245398773006 50 29 92 0 163 14 1186 1235 CAL1538258.1 unnamed protein product [Lymnaea stagnalis] diamond 150 41.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Lymnaeidae Lymnaea Lymnaea stagnalis
29253286 29253286 PRJNA316313_S_NODE_969_length_219_cov_1.714286_g966_i0 PRJNA316313 969 219 1.714286 3.75428634 Ostrea denselamellosa 74434 Mollusca Mollusca 70.9 5.52e-14   NR ADR57174.1 74434 g966 i0 62.5 2.57534246575342 48 18 65.8 0 218 75 34 81 ADR57174.1 elongation factor-1a, partial [Ostrea denselamellosa] diamond 564 70.9 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Ostrea Ostrea denselamellosa
31401928 31401928 PRJNA316313_P_NODE_294336_length_187_cov_2.466667_g292950_i0 PRJNA316313 294336 187 2.466667 4.61266729 Dreissena polymorpha 45954 Mollusca Mollusca 90.5 2.21e-20   NR KAH3833129.1 45954 g292950 i0 74.2 0.994652406417112 62 10 99.5 1 187 2 178 233 KAH3833129.1 hypothetical protein DPMN_106430 [Dreissena polymorpha] diamond 186 90.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha
31939351 31939351 PRJNA316313_P_NODE_354857_length_175_cov_5.710145_g353471_i0 PRJNA316313 354857 175 5.710145 9.99275375 Mya arenaria 6604 Mollusca Mollusca 60.5 8.47e-9   NR XP_052809501.1 6604 g353471 i0 54.2 1.64571428571429 48 22 82.3 0 32 175 1414 1461 XP_052809501.1 uncharacterized protein LOC128237967 [Mya arenaria] diamond 288 60.5 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
32855514 32855514 PRJNA316313_P_NODE_209620_length_187_cov_3.300000_g208234_i0 PRJNA316313 209620 187 3.3 6.171 Magallana gigas 29159 Mollusca Mollusca 42.7 0.0176   NR XP_011430730.3 29159 g208234 i0 68 0.802139037433155 25 8 40.1 0 113 187 104 128 XP_011430730.3 probable inactive tRNA-specific adenosine deaminase-like protein 3 [Magallana gigas] diamond 150 42.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;