RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA316313" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA316313 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26870726 26870726 PRJNA316313_P_NODE_108221_length_199_cov_4.950617_g106835_i0 PRJNA316313 108221 199 4.950617 9.85172783 Pseudomonadati 3379134 Bacteria Bacteria 69.3 3.18e-12   NR MDQ7815815.1 2614255 g106835 i0 50 5.75879396984925 64 32 96.5 0 6 197 53 116 MDQ7815815.1 peptidoglycan editing factor PgeF [Melioribacteraceae bacterium] diamond 1146 69.7 0.994261119081779 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium
28937879 28937879 PRJNA316313_P_NODE_87868_length_215_cov_3.775281_g86482_i0 PRJNA316313 87868 215 3.775281 8.11685415 Ignavibacteria bacterium 2053306 Bacteria Bacteria 48.1 3.1e-4   NR MBV6479467.1 2053306 g86482 i0 72 0.809302325581395 25 7 34.9 0 76 2 54 78 MBV6479467.1 Glycosyltransferase Gtf1 [Ignavibacteria bacterium] diamond 174 48.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
29853508 29853508 PRJNA316313_P_NODE_507811_length_150_cov_2.858407_g506425_i0 PRJNA316313 507811 150 2.858407 4.2876105 Ignavibacteria bacterium 2053306 Bacteria Bacteria 60.1 7.5e-9   NR MBI2793745.1 2053306 g506425 i0 81.8 1.32 33 4 62 1 57 149 254 286 MBI2793745.1 PD40 domain-containing protein [Ignavibacteria bacterium] diamond 198 60.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
30200713 30200713 PRJNA316313_P_NODE_77152_length_225_cov_2.904255_g75766_i0 PRJNA316313 77152 225 2.904255 6.53457375 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 114 1.7e-29   NR MCZ7616633.1 2651163 g75766 i0 67.6 0.986666666666667 74 24 98.7 0 224 3 77 150 MCZ7616633.1 DUF262 domain-containing protein [Ignavibacteriaceae bacterium] diamond 222 114 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium
31116911 31116911 PRJNA316313_P_NODE_263795_length_187_cov_2.666667_g262409_i0 PRJNA316313 263795 187 2.666667 4.98666729 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 52.8 7.04e-7   NR RPI00382.1 2026749 g262409 i0 96 0.802139037433155 25 1 40.1 0 3 77 42 66 RPI00382.1 MAG: M15 family peptidase [Ignavibacteriota bacterium] diamond 150 52.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
31465235 31465235 PRJNA316313_P_NODE_349016_length_179_cov_3.943662_g347630_i0 PRJNA316313 349016 179 3.943662 7.05915498 Ignavibacteria bacterium GWA2_35_8 1798417 Bacteria Bacteria 99.8 8.26e-23   NR OGU13795.1 1798417 g347630 i0 78 3.95530726256983 59 13 98.9 0 178 2 82 140 OGU13795.1 MAG: hypothetical protein A2X63_10445 [Ignavibacteria bacterium GWA2_35_8] diamond 708 99.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium GWA2_35_8

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;