RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA316313" and tax_phylum = "Artverviricota"

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tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA316313 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27327455 27327455 PRJNA316313_P_NODE_274323_length_187_cov_2.593333_g272937_i0 PRJNA316313 274323 187 2.593333 4.84953271 Tobacco vein clearing virus 107324 Viruses Viruses 44.3 0.00516   NR NP_569141.1 107324 g272937 i0 85 0.641711229946524 20 3 32.1 0 128 187 521 540 NP_569141.1 polyprotein [Tobacco vein clearing virus] diamond 120 44.3 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Solendovirus Solendovirus venanicotianae
30042857 30042857 PRJNA316313_P_NODE_254931_length_187_cov_2.800000_g253545_i0 PRJNA316313 254931 187 2.8 5.236 Tobacco vein clearing virus 107324 Viruses Viruses 56.6 2.17e-7   NR NP_569139.1 107324 g253545 i0 84 1.60427807486631 25 4 40.1 0 185 111 494 518 NP_569139.1 putative coat protein [Tobacco vein clearing virus] diamond 300 56.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Solendovirus Solendovirus venanicotianae
30579784 30579784 PRJNA316313_P_NODE_314433_length_187_cov_2.320000_g313047_i0 PRJNA316313 314433 187 2.32 4.3384 Tobacco vein clearing virus 107324 Viruses Viruses 41.6 0.0464   NR NP_569139.1 107324 g313047 i0 68 0.401069518716578 25 8 40.1 0 112 186 386 410 NP_569139.1 putative coat protein [Tobacco vein clearing virus] diamond 75 41.6 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Solendovirus Solendovirus venanicotianae
30801154 30801154 PRJNA316313_P_NODE_503834_length_150_cov_3.238938_g502448_i0 PRJNA316313 503834 150 3.238938 4.858407 Tobacco vein clearing virus 107324 Viruses Viruses 68.9 5.85e-12   NR NP_569141.1 107324 g502448 i0 57.8 2.56 64 11 96 1 148 5 506 569 NP_569141.1 polyprotein [Tobacco vein clearing virus] diamond 384 68.9 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Solendovirus Solendovirus venanicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;