RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA316313" and tax_phylum = "Annelida"

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tax_superkingdom 1

tax_phylum 1

  • Annelida · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA316313 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29442688 29442688 PRJNA316313_P_NODE_361570_length_171_cov_3.783582_g360184_i0 PRJNA316313 361570 171 3.783582 6.46992522 Paralvinella palmiformis 53620 Annelida Annelida 41.2 0.0491   NR KAK2157615.1 53620 g360184 i0 48.7 0.684210526315789 39 20 68.4 0 30 146 68 106 KAK2157615.1 hypothetical protein LSH36_188g08013 [Paralvinella palmiformis] diamond 117 41.2 1 Eukaryota Opisthokonta Metazoa Annelida Polychaeta Terebellida Alvinellidae Paralvinella Paralvinella palmiformis
30674806 30674806 PRJNA316313_S_NODE_1093_length_209_cov_1.133721_g1090_i0 PRJNA316313 1093 209 1.133721 2.36947689 Eisenia andrei 168636 Annelida Annelida 57.4 1.45e-7   NR AEB92227.1 168636 g1090 i0 45.2 0.889952153110048 62 32 86.1 1 180 1 120 181 AEB92227.1 P43 [Eisenia andrei] diamond 186 57.4 1 Eukaryota Opisthokonta Metazoa Annelida Clitellata Crassiclitellata Lumbricidae Eisenia Eisenia andrei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;