RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA316313" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 31 ✖

bioproject 1

  • PRJNA316313 · 31 ✖

analysis 1

  • diamond · 31 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25294646 25294646 PRJNA316313_P_NODE_446200_length_151_cov_3.745614_g444814_i0 PRJNA316313 446200 151 3.7456140000000002 5.65587714 Synergistes jonesii 2754 Bacteria Bacteria 102 7.26e-25   NR WP_051682803.1 2754 g444814 i0 83.3 1.19205298013245 60 0 99.3 1 151 2 105 164 WP_051682803.1 phosphate ABC transporter ATP-binding protein PstB [Synergistes jonesii] diamond 180 102 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Synergistes Synergistes jonesii
27137289 27137289 PRJNA316313_P_NODE_266062_length_187_cov_2.613333_g264676_i0 PRJNA316313 266062 187 2.613333 4.88693271 Deinococcus gobiensis 502394 Bacteria Bacteria 80.5 8.93e-16   NR WP_014682933.1 502394 g264676 i0 53.8 1.25133689839572 78 17 94.7 1 187 11 1513 1590 WP_014682933.1 helicase-related protein [Deinococcus gobiensis] diamond 234 80.5 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis
27264258 27264258 PRJNA316313_P_NODE_271963_length_187_cov_2.600000_g270577_i0 PRJNA316313 271963 187 2.6 4.862 Deinococcus aestuarii 2774531 Bacteria Bacteria 64.3 1.92e-10   NR WP_216327822.1 2774531 g270577 i0 61.7 0.962566844919786 60 17 96.3 1 6 185 60 113 WP_216327822.1 hypothetical protein [Deinococcus aestuarii] diamond 180 64.3 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aestuarii
27439845 27439845 PRJNA316313_P_NODE_393463_length_153_cov_6.655172_g392077_i0 PRJNA316313 393463 153 6.655172 10.18241316 Bacteria 2 Bacteria Bacteria 41.6 0.0167   NR HQE50440.1 1871331 g392077 i0 43.8 3.82352941176471 48 27 94.1 0 144 1 60 107 HQE50440.1 hypothetical protein [Fervidobacterium sp.] diamond 585 42 0.990476190476191 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
27548442 27548442 PRJNA316313_P_NODE_328324_length_186_cov_6.818792_g326938_i0 PRJNA316313 328324 186 6.818792 12.68295312 Deinococcus petrolearius 1751295 Bacteria Bacteria 86.7 5.81e-18   NR WP_380050913.1 1751295 g326938 i0 76.2 1.01612903225806 63 13 98.4 1 3 185 217 279 WP_380050913.1 helicase-related protein [Deinococcus petrolearius] diamond 189 86.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus petrolearius
27611786 27611786 PRJNA316313_P_NODE_503584_length_150_cov_3.256637_g502198_i0 PRJNA316313 503584 150 3.256637 4.8849555 Deinococcus taklimakanensis 536443 Bacteria Bacteria 94 4.42e-22   NR WP_386842788.1 536443 g502198 i0 100 0.9 45 0 90 0 2 136 183 227 WP_386842788.1 c-type cytochrome [Deinococcus taklimakanensis] diamond 135 94 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taklimakanensis
27706733 27706733 PRJNA316313_P_NODE_306164_length_187_cov_2.386667_g304778_i0 PRJNA316313 306164 187 2.386667 4.46306729 Deinococcus 1298 Bacteria Bacteria 57 8.14e-9   NR WP_232472388.1 1298 g304778 i0 100 0.786096256684492 24 0 38.5 0 74 3 15 38 WP_232472388.1 MULTISPECIES: hypothetical protein [Deinococcus] diamond 147 57 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus  
27738232 27738232 PRJNA316313_P_NODE_253604_length_187_cov_2.813333_g252218_i0 PRJNA316313 253604 187 2.813333 5.26093271 Deinococcus cavernae 2320857 Bacteria Bacteria 45.8 0.00139   NR WP_119760339.1 2320857 g252218 i0 91.3 0.368983957219251 23 2 36.9 0 114 182 292 314 WP_119760339.1 transposase [Deinococcus cavernae] diamond 69 45.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus cavernae
27769727 27769727 PRJNA316313_P_NODE_288704_length_187_cov_2.506667_g287318_i0 PRJNA316313 288704 187 2.506667 4.68746729 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 52.8 4.92e-6   NR WP_299076282.1 1678694 g287318 i0 100 0.770053475935829 24 0 38.5 0 114 185 224 247 WP_299076282.1 NAD(P)/FAD-dependent oxidoreductase [uncultured Fretibacterium sp.] diamond 144 52.8 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
28197171 28197171 PRJNA316313_P_NODE_434666_length_151_cov_4.105263_g433280_i0 PRJNA316313 434666 151 4.105263 6.19894713 Deinococcus 1298 Bacteria Bacteria 81.3 2.82e-16   NR WP_189066694.1 1837379 g433280 i0 72.1 2.42384105960265 61 6 99.3 1 1 150 362 422 WP_189066694.1 Tn3 family transposase [Deinococcus seoulensis] diamond 366 81.3 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus seoulensis
28211325 28211325 PRJNA316313_P_NODE_259246_length_187_cov_2.740000_g257860_i0 PRJNA316313 259246 187 2.74 5.1238 Thermus 270 Bacteria Bacteria 82.8 2.02e-17   NR WP_026234218.1 270 g257860 i0 72.1 0.978609625668449 61 9 97.9 1 3 185 75 127 WP_026234218.1 MULTISPECIES: SDR family NAD(P)-dependent oxidoreductase [Thermus] diamond 183 82.8 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus  
28450068 28450068 PRJNA316313_P_NODE_153706_length_187_cov_4.533333_g152320_i0 PRJNA316313 153706 187 4.533333 8.47733271 Deinococcus 1298 Bacteria Bacteria 47 5.69e-4   NR WP_303101520.1 47478 g152320 i0 100 0.786096256684492 25 0 40.1 0 2 76 432 456 WP_303101520.1 ABC transporter permease [Deinococcus sp.] diamond 147 47.4 0.991561181434599 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
28811077 28811077 PRJNA316313_P_NODE_241928_length_187_cov_2.926667_g240542_i0 PRJNA316313 241928 187 2.926667 5.47286729 Thermus sp. 275 Bacteria Bacteria 56.2 8.92e-8   NR WP_370532243.1 275 g240542 i0 100 0.401069518716578 25 0 40.1 0 112 186 34 58 WP_370532243.1 hypothetical protein [Thermus sp.] diamond 75 56.2 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp.
28842804 28842804 PRJNA316313_P_NODE_13588_length_455_cov_8.433014_g12277_i0 PRJNA316313 13588 455 8.433014 38.3702137 Trueperaceae bacterium 2026798 Bacteria Bacteria 279 5.84e-93   NR MDF1523506.1 2026798 g12277 i0 84.1 2.98681318681319 151 24 99.6 0 455 3 36 186 MDF1523506.1 C-terminal helicase domain-containing protein [Trueperaceae bacterium] diamond 1359 279 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
29284931 29284931 PRJNA316313_P_NODE_494669_length_150_cov_3.938053_g493283_i0 PRJNA316313 494669 150 3.938053 5.9070795 Deinococcus radiotolerans 1309407 Bacteria Bacteria 41.6 0.0265   NR GGL16696.1 1309407 g493283 i0 50 1.52 38 19 76 0 137 24 323 360 GGL16696.1 hypothetical protein GCM10010844_39490 [Deinococcus radiotolerans] diamond 228 41.6 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiotolerans
29569108 29569108 PRJNA316313_P_NODE_170910_length_187_cov_4.000000_g169524_i0 PRJNA316313 170910 187 4 7.48 Deinococcus aquatilis 519440 Bacteria Bacteria 45.4 0.00139   NR WP_019010815.1 519440 g169524 i0 86.4 0.689839572192513 22 3 35.3 0 74 9 174 195 WP_019010815.1 antibiotic biosynthesis monooxygenase [Deinococcus aquatilis] diamond 129 45.4 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aquatilis
29726774 29726774 PRJNA316313_P_NODE_142690_length_187_cov_5.093333_g141304_i0 PRJNA316313 142690 187 5.093333 9.52453271 Meiothermus granaticius 863370 Bacteria Bacteria 70.1 1.58e-12   NR WP_119356601.1 863370 g141304 i0 59.3 1.90909090909091 59 24 94.7 0 182 6 4 62 WP_119356601.1 undecaprenyl-diphosphatase UppP [Meiothermus granaticius] diamond 357 70.1 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Meiothermus Meiothermus granaticius
29758497 29758497 PRJNA316313_P_NODE_133891_length_187_cov_5.946667_g132505_i0 PRJNA316313 133891 187 5.946667 11.12026729 Deinococcus sp. YIM 134 47478 Bacteria Bacteria 90.1 3.41e-19   NR WP_331823764.1 3118910 g132505 i0 77 1.9572192513369 61 13 97.9 1 185 3 477 536 WP_331823764.1 long-chain fatty acid--CoA ligase [Deinococcus sp. YIM 134068] diamond 366 90.1 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus lichenicola
30106014 30106014 PRJNA316313_P_NODE_240772_length_187_cov_2.933333_g239386_i0 PRJNA316313 240772 187 2.933333 5.48533271 Thermus sp. 275 Bacteria Bacteria 52.8 5.12e-6   NR WP_314134021.1 275 g239386 i0 95.8 1.9572192513369 24 1 38.5 0 186 115 318 341 WP_314134021.1 sugar transferase [Thermus sp.] diamond 366 52.8 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus sp.
30359403 30359403 PRJNA316313_P_NODE_392692_length_154_cov_2.410256_g391306_i0 PRJNA316313 392692 154 2.410256 3.71179424 Thermus oshimai 56957 Bacteria Bacteria 57 9.84e-8   NR WP_015065381.1 56957 g391306 i0 90.3 1.20779220779221 31 3 60.4 0 3 95 60 90 WP_015065381.1 TRAP transporter large permease [Thermus oshimai] diamond 186 57 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus oshimai
30390947 30390947 PRJNA316313_P_NODE_462473_length_151_cov_3.263158_g461087_i0 PRJNA316313 462473 151 3.263158 4.9273685800000004 Deinococcus antarcticus 1298767 Bacteria Bacteria 90.9 1.16e-19   NR WP_380077588.1 1298767 g461087 i0 100 0.993377483443709 50 0 99.3 0 151 2 771 820 WP_380077588.1 S8 family peptidase [Deinococcus antarcticus] diamond 150 90.9 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus
30818610 30818610 PRJNA316313_P_NODE_326814_length_187_cov_2.033333_g325428_i0 PRJNA316313 326814 187 2.033333 3.80233271 Deinococcus 1298 Bacteria Bacteria 53.1 3.8e-6   NR WP_291425497.1 47478 g325428 i0 100 1.20320855614973 25 0 40.1 0 113 187 256 280 WP_291425497.1 DUF4158 domain-containing protein [Deinococcus sp.] diamond 225 53.1 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
30864285 30864285 PRJNA316313_P_NODE_207954_length_187_cov_3.333333_g206568_i0 PRJNA316313 207954 187 3.333333 6.23333271 Deinococcus radiotolerans 1309407 Bacteria Bacteria 45.8 6.88e-4   NR WP_189070141.1 1309407 g206568 i0 79.2 0.385026737967914 24 5 38.5 0 184 113 68 91 WP_189070141.1 CDP-alcohol phosphatidyltransferase family protein [Deinococcus radiotolerans] diamond 72 45.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiotolerans
31197317 31197317 PRJNA316313_P_NODE_458475_length_151_cov_3.350877_g457089_i0 PRJNA316313 458475 151 3.350877 5.05982427 Bacteria 2 Bacteria Bacteria 43.1 0.00768   NR WP_046843912.1 1298 g457089 i0 96 11.7615894039735 25 1 49.7 0 75 1 15 39 WP_046843912.1 MULTISPECIES: TerC family protein [Deinococcus] diamond 1776 43.1 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus  
31211475 31211475 PRJNA316313_P_NODE_174935_length_187_cov_3.906667_g173549_i0 PRJNA316313 174935 187 3.906667 7.30546729 Deinococcus sp. NW-56 2080419 Bacteria Bacteria 82.8 9.84e-17   NR WP_104992647.1 2080419 g173549 i0 69.5 1.92513368983957 59 15 94.7 1 7 183 260 315 WP_104992647.1 DUF1156 domain-containing protein [Deinococcus sp. NW-56] diamond 360 82.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. NW-56
31275175 31275175 PRJNA316313_P_NODE_327195_length_187_cov_1.993333_g325809_i0 PRJNA316313 327195 187 1.993333 3.72753271 Deinococcus xinjiangensis 457454 Bacteria Bacteria 55.5 2.09e-7   NR WP_353541905.1 457454 g325809 i0 96 0.401069518716578 25 1 40.1 0 2 76 42 66 WP_353541905.1 hypothetical protein [Deinococcus xinjiangensis] diamond 75 55.5 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus xinjiangensis
31465264 31465264 PRJNA316313_P_NODE_433836_length_151_cov_4.122807_g432450_i0 PRJNA316313 433836 151 4.122807 6.22543857 Deinococcus altitudinis 468914 Bacteria Bacteria 57.8 5.26e-8   NR WP_407572859.1 468914 g432450 i0 100 0.496688741721854 25 0 49.7 0 76 150 167 191 WP_407572859.1 ABC transporter substrate-binding protein [Deinococcus altitudinis] diamond 75 57.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus altitudinis
31844445 31844445 PRJNA316313_P_NODE_407537_length_151_cov_6.350877_g406151_i0 PRJNA316313 407537 151 6.350877 9.58982427 Deinococcus antarcticus 1298767 Bacteria Bacteria 82.8 8.1e-17   NR WP_380075924.1 1298767 g406151 i0 61.3 1.58940397350993 80 1 99.3 1 151 2 530 609 WP_380075924.1 ATP-binding protein [Deinococcus antarcticus] diamond 240 82.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus
32034413 32034413 PRJNA316313_P_NODE_313738_length_187_cov_2.333333_g312352_i0 PRJNA316313 313738 187 2.333333 4.36333271 Deinococcus budaensis 1665626 Bacteria Bacteria 47 4.65e-5   NR WP_184027552.1 1665626 g312352 i0 88 0.401069518716578 25 3 40.1 0 185 111 22 46 WP_184027552.1 hypothetical protein [Deinococcus budaensis] diamond 75 47 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus budaensis
32051774 32051774 PRJNA316313_P_NODE_496078_length_150_cov_3.823009_g494692_i0 PRJNA316313 496078 150 3.823009 5.7345135 Deinococcus 1298 Bacteria Bacteria 52.8 2.95e-6   NR WP_088246850.1 223556 g494692 i0 95.8 3.04 24 1 48 0 78 149 307 330 WP_088246850.1 PucR family transcriptional regulator [Deinococcus indicus] diamond 456 52.8 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus indicus
32603759 32603759 PRJNA316313_P_NODE_243060_length_187_cov_2.913333_g241674_i0 PRJNA316313 243060 187 2.913333 5.44793271 Deinococcus petrolearius 1751295 Bacteria Bacteria 67 4.9e-11   NR WP_380049922.1 1751295 g241674 i0 50.6 1.42780748663102 89 17 99.5 1 2 187 80 168 WP_380049922.1 hypothetical protein [Deinococcus petrolearius] diamond 267 67 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus petrolearius

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;