RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA316313" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA316313 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27643456 27643456 PRJNA316313_S_NODE_144_length_471_cov_1.921659_g142_i0 PRJNA316313 144 471 1.921659 9.05101389 Angomonas deanei 59799 Euglenozoa other_Eukaryota 199 1.62e-60   NR EPY26386.1 59799 g142 i0 61.5 18.8789808917197 156 53 99.4 2 470 3 81 229 EPY26386.1 elongation factor 1-alpha [Angomonas deanei] diamond 8892 199 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Angomonas Angomonas deanei
28464225 28464225 PRJNA316313_P_NODE_281426_length_187_cov_2.553333_g280040_i0 PRJNA316313 281426 187 2.553333 4.77473271 Acrasis kona 1008807 Heterolobosea other_Eukaryota 45.1 0.00267   NR KAL0486415.1 1008807 g280040 i0 79.2 0.385026737967914 24 5 38.5 0 2 73 137 160 KAL0486415.1 cytochrome b561 domain-containing protein [Acrasis kona] diamond 72 45.1 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
29790039 29790039 PRJNA316313_P_NODE_262231_length_187_cov_2.693333_g260845_i0 PRJNA316313 262231 187 2.693333 5.03653271 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 42.7 0.00949   NR KAJ9435744.1 91374 g260845 i0 77.3 0.737967914438503 22 5 35.3 0 3 68 44 65 KAJ9435744.1 Phosphatidylinositol:ceramide inositolphosphotransferase, partial [Diplonema papillatum] diamond 138 42.7 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;