RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA315399" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315399 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27264183 27264183 PRJNA315399_P_NODE_445463_length_156_cov_21.067227_g445015_i0 PRJNA315399 445463 156 21.067227 32.86487412 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 45.1 0.00168   NR HEX9951343.1 2838334 g445015 i0 76 0.480769230769231 25 6 48.1 0 78 152 8 32 HEX9951343.1 SPFH domain-containing protein [Rubricoccaceae bacterium] diamond 75 45.1 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
27408156 27408156 PRJNA315399_P_NODE_399903_length_161_cov_8.475806_g399455_i0 PRJNA315399 399903 161 8.475806 13.64604766 root 1 Root_unresolved Root_unresolved 56.6 8.49e-8   NR WP_259125608.1 146919 g399455 i0 58.5 6.59627329192547 41 17 76.4 0 156 34 126 166 WP_259125608.1 thermonuclease family protein [Salinibacter ruber] diamond 1062 57 0.992982456140351 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salinibacteraceae Salinibacter Salinibacter ruber
30737779 30737779 PRJNA315399_P_NODE_205414_length_184_cov_7.700680_g204966_i0 PRJNA315399 205414 184 7.70068 14.1692512 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 50.4 3.37e-6   NR HEX9953545.1 2838334 g204966 i0 96 0.815217391304348 25 1 40.8 0 84 10 50 74 HEX9953545.1 hypothetical protein [Rubricoccaceae bacterium] diamond 150 50.4 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
31812856 31812856 PRJNA315399_S_NODE_162557_length_157_cov_20.900000_g162356_i0 PRJNA315399 162557 157 20.9 32.813 Rubrivirga marina 1196024 Bacteria Bacteria 87.4 2.1e-18   NR WP_095511699.1 1196024 g162356 i0 89.1 1.75796178343949 46 5 87.9 0 20 157 462 507 WP_095511699.1 ferrous iron transport protein B [Rubrivirga marina] diamond 276 87.4 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;