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contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJNA315399" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315399 · 24 ✖

analysis 1

  • diamond · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22060903 22060903 PRJNA315399_S_NODE_139558_length_164_cov_1.826772_g139357_i0 PRJNA315399 139558 164 1.826772 2.99590608 Aphelenchoides bicaudatus 293665 Nematoda Nematoda 106 3.97e-25   NR KAI6191050.1 293665 g139357 i0 100 1.9390243902439 53 0 97 0 4 162 574 626 KAI6191050.1 26S proteasome non-ATPase regulatory subunit 2 [Aphelenchoides bicaudatus] diamond 318 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus
26789713 26789713 PRJNA315399_P_NODE_444481_length_157_cov_2.125000_g444033_i0 PRJNA315399 444481 157 2.125 3.33625 Caenorhabditis elegans 6239 Nematoda Nematoda 55.5 3.78e-7   NR pir|T19605| 6239 g444033 i0 56.3 0.917197452229299 48 21 91.7 0 2 145 186 233 pir|T19605| hypothetical protein C31C9.5 - Caenorhabditis elegans [Caenorhabditis elegans] diamond 144 55.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27200605 27200605 PRJNA315399_P_NODE_27622_length_276_cov_6.489540_g27177_i0 PRJNA315399 27622 276 6.48954 17.9111304 Nippostrongylus brasiliensis 27835 Nematoda Nematoda 51.2 3.76e-5   NR WKY10318.1 27835 g27177 i0 58.8 1.10869565217391 34 14 37 0 6 107 189 222 WKY10318.1 hypothetical protein Q1695_002566 [Nippostrongylus brasiliensis] diamond 306 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Nippostrongylus Nippostrongylus brasiliensis
27408150 27408150 PRJNA315399_P_NODE_263983_length_181_cov_2.465278_g263535_i0 PRJNA315399 263983 181 2.465278 4.46215318 Rhabditida 6236 Nematoda Nematoda 47 4.85e-4   NR KAH7710194.1 70226 g263535 i0 62.2 1.87292817679558 37 12 61.3 1 57 167 35 69 KAH7710194.1 Protein Y45G12B.2 a [Aphelenchoides avenae] diamond 339 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
27548307 27548307 PRJNA315399_P_NODE_29484_length_272_cov_6.859574_g29039_i0 PRJNA315399 29484 272 6.859574 18.65804128 Nippostrongylus brasiliensis 27835 Nematoda Nematoda 51.2 3.63e-5   NR WKY10318.1 27835 g29039 i0 58.8 1.125 34 14 37.5 0 6 107 189 222 WKY10318.1 hypothetical protein Q1695_002566 [Nippostrongylus brasiliensis] diamond 306 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Nippostrongylus Nippostrongylus brasiliensis
27579852 27579852 PRJNA315399_P_NODE_374484_length_164_cov_20.086614_g374036_i0 PRJNA315399 374484 164 20.086614 32.94204696 Caenorhabditis remanei 31234 Nematoda Nematoda 43.9 0.00122   NR XP_003113641.2 31234 g374036 i0 39.5 0.786585365853659 43 26 78.7 0 161 33 11 53 XP_003113641.2 hypothetical protein GCK72_006613 [Caenorhabditis remanei] diamond 129 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
27629145 27629145 PRJNA315399_P_NODE_509124_length_150_cov_4.557522_g508676_i0 PRJNA315399 509124 150 4.557522 6.836283 Metazoa 33208 Nematoda Nematoda 41.2 0.0384   NR XGW28165.1 6289 g508676 i0 69.6 1.96 23 7 46 0 135 67 1155 1177 XGW28165.1 hypothetical protein V3C99_008177 [Haemonchus contortus] diamond 294 41.6 0.990384615384615 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
28179572 28179572 PRJNA315399_P_NODE_24886_length_282_cov_8.069388_g24441_i0 PRJNA315399 24886 282 8.069388 22.75567416 Nippostrongylus brasiliensis 27835 Nematoda Nematoda 51.2 4.02e-5   NR WKY10318.1 27835 g24441 i0 58.8 1.08510638297872 34 14 36.2 0 277 176 189 222 WKY10318.1 hypothetical protein Q1695_002566 [Nippostrongylus brasiliensis] diamond 306 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Nippostrongylus Nippostrongylus brasiliensis
28558908 28558908 PRJNA315399_P_NODE_387047_length_163_cov_3.531746_g386599_i0 PRJNA315399 387047 163 3.531746 5.75674598 Trichostrongylus colubriformis 6319 Nematoda Nematoda 41.2 0.0439   NR KAK5974675.1 6319 g386599 i0 44.7 0.699386503067485 38 21 69.9 0 125 12 129 166 KAK5974675.1 hypothetical protein GCK32_006605, partial [Trichostrongylus colubriformis] diamond 114 41.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus colubriformis
28716661 28716661 PRJNA315399_P_NODE_188307_length_185_cov_10.641892_g187859_i0 PRJNA315399 188307 185 10.641892 19.6875002 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 52 9.16e-6   NR KAE9554125.1 2598192 g187859 i0 80.8 0.421621621621622 26 5 42.2 0 93 16 330 355 KAE9554125.1 hypothetical protein FO519_002662 [Halicephalobus sp. NKZ332] diamond 78 52 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
29018524 29018524 PRJNA315399_P_NODE_93508_length_204_cov_4.586826_g93060_i0 PRJNA315399 93508 204 4.586826 9.35712504 root 1 Root_unresolved Root_unresolved 53.1 4.96e-6   NR VDM09056.1 6293 g93060 i0 46.2 2.32352941176471 65 26 82.4 1 186 19 62 126 VDM09056.1 unnamed protein product [Wuchereria bancrofti] diamond 474 53.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
29032577 29032577 PRJNA315399_P_NODE_427488_length_158_cov_10.322314_g427040_i0 PRJNA315399 427488 158 10.322314 16.30925612 Steinernema carpocapsae 34508 Nematoda Nematoda 54.3 9.72e-7   NR TKR87546.1 34508 g427040 i0 54.5 1.68987341772152 44 19 83.5 1 14 145 1276 1318 TKR87546.1 hypothetical protein L596_011925 [Steinernema carpocapsae] diamond 267 54.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
29491769 29491769 PRJNA315399_P_NODE_432210_length_158_cov_3.884298_g431762_i0 PRJNA315399 432210 158 3.884298 6.13719084 Metazoa 33208 Nematoda Nematoda 43.1 0.00872   NR KAL3096516.1 97005 g431762 i0 46 8.58227848101266 50 27 94.9 0 156 7 1145 1194 KAL3096516.1 hypothetical protein niasHS_004176 [Heterodera schachtii] diamond 1356 43.5 0.990804597701149 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera schachtii
29663431 29663431 PRJNA315399_P_NODE_285090_length_179_cov_6.647887_g284642_i0 PRJNA315399 285090 179 6.647887 11.89971773 Caenorhabditis nigoni 1611254 Nematoda Nematoda 56.2 2.76e-7   NR PIC13485.1 1611254 g284642 i0 48.1 0.905027932960894 54 28 90.5 0 10 171 632 685 PIC13485.1 hypothetical protein B9Z55_027619 [Caenorhabditis nigoni] diamond 162 56.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis nigoni
30660565 30660565 PRJNA315399_P_NODE_361793_length_167_cov_2.361538_g361345_i0 PRJNA315399 361793 167 2.361538 3.94376846 Steinernema 34507 Nematoda Nematoda 42.7 0.0137   NR TMS39605.1 34508 g361345 i0 46.9 1.1497005988024 32 17 57.5 0 25 120 1912 1943 TMS39605.1 hypothetical protein L596_006103 [Steinernema carpocapsae] diamond 192 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
30737803 30737803 PRJNA315399_P_NODE_333914_length_174_cov_3.518248_g333466_i0 PRJNA315399 333914 174 3.518248 6.12175152 Trichinella sp. T8 92180 Nematoda Nematoda 44.7 0.00307   NR KRZ97668.1 92180 g333466 i0 70.4 1.89655172413793 27 8 46.6 0 20 100 182 208 KRZ97668.1 Uncharacterized protein T08_959, partial [Trichinella sp. T8] diamond 330 44.7 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella sp. T8
30881680 30881680 PRJNA315399_P_NODE_244354_length_182_cov_3.634483_g243906_i0 PRJNA315399 244354 182 3.634483 6.61475906 Metazoa 33208 Nematoda Nematoda 44.7 0.00331   NR CDJ94577.1 6289 g243906 i0 85 3.85714285714286 20 3 33 0 120 179 243 262 CDJ94577.1 Transposase domain containing protein [Haemonchus contortus] diamond 702 44.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
31085509 31085509 PRJNA315399_P_NODE_385995_length_163_cov_4.325397_g385547_i0 PRJNA315399 385995 163 4.325397 7.05039711 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 47.8 2.15e-4   NR KAE9555827.1 2598192 g385547 i0 50 0.809815950920245 44 20 77.3 1 129 4 15 58 KAE9555827.1 hypothetical protein FO519_001041 [Halicephalobus sp. NKZ332] diamond 132 47.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
31338309 31338309 PRJNA315399_P_NODE_77976_length_212_cov_6.331429_g77528_i0 PRJNA315399 77976 212 6.331429 13.42262948 Caenorhabditis remanei 31234 Nematoda Nematoda 58.5 6.7e-8   NR EFO95576.1 31234 g77528 i0 63.9 2.20754716981132 36 13 50.9 0 127 20 702 737 EFO95576.1 hypothetical protein CRE_08674 [Caenorhabditis remanei] diamond 468 58.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
31387631 31387631 PRJNA315399_P_NODE_219436_length_183_cov_12.075342_g218988_i0 PRJNA315399 219436 183 12.075342 22.09787586 Rhabditida 6236 Nematoda Nematoda 44.7 0.00366   NR KAH7716702.1 70226 g218988 i0 59.4 2.67213114754098 32 13 52.5 0 165 70 1272 1303 KAH7716702.1 hypothetical protein AAVH_15884 [Aphelenchoides avenae] diamond 489 44.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
31925126 31925126 PRJNA315399_S_NODE_100817_length_178_cov_3.177305_g100616_i0 PRJNA315399 100817 178 3.177305 5.6556029 Opisthokonta 33154 Nematoda Nematoda 49.3 2.77e-5   NR NP_498572.1 6239 g100616 i0 95.5 11.6797752808989 22 1 37.1 0 176 111 131 152 NP_498572.1 Small ribosomal subunit protein uS11 [Caenorhabditis elegans] diamond 2079 49.7 0.991951710261569 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
32002684 32002684 PRJNA315399_P_NODE_431938_length_158_cov_4.049587_g431490_i0 PRJNA315399 431938 158 4.049587 6.39834746 Trichuris suis 68888 Nematoda Nematoda 42 0.0198   NR KFD47209.1 68888 g431490 i0 71.4 5.84810126582278 28 8 53.2 0 71 154 83 110 KFD47209.1 hypothetical protein M513_11916 [Trichuris suis] diamond 924 42 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
32319360 32319360 PRJNA315399_P_NODE_387359_length_163_cov_3.317460_g386911_i0 PRJNA315399 387359 163 3.31746 5.4074598 Trichinella pseudospiralis 6337 Nematoda Nematoda 63.2 1.35e-11   NR KRY63622.1 6337 g386911 i0 85.7 1.93251533742331 35 5 64.4 0 40 144 15 49 KRY63622.1 hypothetical protein T4D_13828 [Trichinella pseudospiralis] diamond 315 63.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
32477414 32477414 PRJNA315399_P_NODE_281239_length_180_cov_1.965035_g280791_i0 PRJNA315399 281239 180 1.965035 3.537063 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 89.7 4.4e-19   NR KAE9553015.1 2598192 g280791 i0 76.5 0.85 51 12 85 0 163 11 582 632 KAE9553015.1 hypothetical protein FO519_003776 [Halicephalobus sp. NKZ332] diamond 153 89.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;