RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA315399" and tax_phylum = "Negarnaviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA315399 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28779582 28779582 PRJNA315399_P_NODE_288267_length_179_cov_4.950704_g287819_i0 PRJNA315399 288267 179 4.950704 8.86176016 brine shrimp rhabdovirus 1 2900475 Viruses Viruses 65.9 1.11e-10   NR UNI73977.1 2900475 g287819 i0 50 0.972067039106145 58 29 97.2 0 175 2 70 127 UNI73977.1 MAG: RNA-dependent RNA polymerase [brine shrimp rhabdovirus 1] diamond 174 65.9 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   brine shrimp rhabdovirus 1
29853333 29853333 PRJNA315399_P_NODE_341871_length_171_cov_26.343284_g341423_i0 PRJNA315399 341871 171 26.343284 45.04701564 brine shrimp rhabdovirus 1 2900475 Viruses Viruses 59.7 1.43e-8   NR UNI73976.1 2900475 g341423 i0 51.1 0.824561403508772 47 23 82.5 0 163 23 374 420 UNI73976.1 MAG: glycoprotein [brine shrimp rhabdovirus 1] diamond 141 59.7 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae   brine shrimp rhabdovirus 1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;