RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA315399" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315399 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19509149 19509149 PRJNA315399_P_NODE_420856_length_159_cov_5.278689_g420408_i0 PRJNA315399 420856 159 5.278689 8.39311551 PVC group 1783257 Bacteria Bacteria 100 4.289999999999999e-23   NR OGV65382.1 1798577 g420408 i0 88.5 5.81132075471698 52 6 98.1 0 2 157 199 250 OGV65382.1 MAG: glutamate dehydrogenase [Lentisphaerae bacterium RIFOXYA12_64_32] diamond 924 101 0.99009900990099 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium RIFOXYA12_64_32
29001181 29001181 PRJNA315399_S_NODE_104448_length_176_cov_5.971223_g104247_i0 PRJNA315399 104448 176 5.971223 10.50935248 Lentisphaeria bacterium 2053569 Bacteria Bacteria 72.8 3.12e-13   NR MFA5204225.1 2053569 g104247 i0 63.3 1.02272727272727 60 20 98.9 1 176 3 24 83 MFA5204225.1 Gfo/Idh/MocA family oxidoreductase [Lentisphaeria bacterium] diamond 180 72.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
29176260 29176260 PRJNA315399_P_NODE_320929_length_177_cov_3.450000_g320481_i0 PRJNA315399 320929 177 3.45 6.1065 Pseudomonadati 3379134 Bacteria Bacteria 95.1 4.97e-21   NR MDD2404534.1 2793042 g320481 i0 85.5 1.86440677966102 55 7 91.5 1 174 13 375 429 MDD2404534.1 DUF262 domain-containing protein [Victivallaceae bacterium] diamond 330 95.1 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
29807438 29807438 PRJNA315399_P_NODE_401271_length_161_cov_6.209677_g400823_i0 PRJNA315399 401271 161 6.209677 9.99757997 Bacteria 2 Bacteria Bacteria 60.1 8.42e-9   NR OGV69391.1 1798578 g400823 i0 57.5 3.50310559006211 40 17 74.5 0 21 140 282 321 OGV69391.1 MAG: hypothetical protein A2283_22295 [Lentisphaerae bacterium RIFOXYA12_FULL_48_11] diamond 564 60.5 0.993388429752066 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium RIFOXYA12_FULL_48_11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;