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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA315399" and tax_phylum = "Candidatus Parcubacteria"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Parcubacteria · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA315399 · 11 ✖

analysis 1

  • diamond · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27516786 27516786 PRJNA315399_P_NODE_325883_length_176_cov_3.892086_g325435_i0 PRJNA315399 325883 176 3.892086 6.85007136 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 49.7 7.15e-6   NR RJQ28573.1 2762014 g325435 i0 91.7 0.818181818181818 24 2 40.9 0 2 73 41 64 RJQ28573.1 MAG: RNA-binding protein [Candidatus Parcubacteria bacterium] diamond 144 49.7 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
28337772 28337772 PRJNA315399_P_NODE_492366_length_152_cov_2.547826_g491918_i0 PRJNA315399 492366 152 2.547826 3.87269552 Parcubacteria bacterium OLB19 1617425 Bacteria Bacteria 45.4 3.09e-4   NR KXJ97846.1 1617425 g491918 i0 78.3 0.453947368421053 23 5 45.4 0 11 79 88 110 KXJ97846.1 MAG: glutaredoxin 2 [Parcubacteria bacterium OLB19] diamond 69 45.4 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Parcubacteria bacterium OLB19
28653481 28653481 PRJNA315399_P_NODE_350967_length_169_cov_4.371212_g350519_i0 PRJNA315399 350967 169 4.371212 7.38734828 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 46.6 5.88e-4   NR RJR06534.1 2762014 g350519 i0 74.1 0.479289940828402 27 7 47.9 0 18 98 600 626 RJR06534.1 MAG: hypothetical protein C4588_07750 [Candidatus Parcubacteria bacterium] diamond 81 46.6 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
29221973 29221973 PRJNA315399_P_NODE_337929_length_173_cov_2.477941_g337481_i0 PRJNA315399 337929 173 2.477941 4.28683793 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 87.4 7.32e-19   NR GIW68042.1 2762014 g337481 i0 93 0.745664739884393 43 3 74.6 0 15 143 263 305 GIW68042.1 MAG: hypothetical protein KatS3mg096_910 [Candidatus Parcubacteria bacterium] diamond 129 87.4 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
29789908 29789908 PRJNA315399_P_NODE_127511_length_192_cov_6.929032_g127063_i0 PRJNA315399 127511 192 6.929032 13.30374144 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 41.6 0.0383   NR MCK4554956.1 2762014 g127063 i0 28.6 0.984375 63 45 98.4 0 3 191 16 78 MCK4554956.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 189 41.6 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
30534139 30534139 PRJNA315399_P_NODE_433653_length_158_cov_3.148760_g433205_i0 PRJNA315399 433653 158 3.14876 4.9750408 root 1 Root_unresolved Root_unresolved 54.3 9.63e-7   NR KPJ71685.1 1703767 g433205 i0 75 16.4050632911392 32 8 60.8 0 8 103 365 396 KPJ71685.1 MAG: tRNA-splicing ligase [Parcubacteria bacterium DG_74_3] diamond 2592 54.3 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Parcubacteria bacterium DG_74_3
32034287 32034287 PRJNA315399_P_NODE_179118_length_186_cov_5.000000_g178670_i0 PRJNA315399 179118 186 5 9.3 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 91.3 1.32e-19   NR BCX16108.1 2762014 g178670 i0 73.8 1.96774193548387 61 10 88.7 1 3 167 295 355 BCX16108.1 MAG: hypothetical protein KatS3mg098_337 [Candidatus Parcubacteria bacterium] diamond 366 91.3 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32192608 32192608 PRJNA315399_S_NODE_19158_length_284_cov_1.562753_g18957_i0 PRJNA315399 19158 284 1.562753 4.43821852 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 55.1 2.29e-6   NR NCQ56158.1 2762014 g18957 i0 38 2.51408450704225 79 36 83.5 3 257 21 5 70 NCQ56158.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 714 55.1 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32224222 32224222 PRJNA315399_P_NODE_433098_length_158_cov_3.429752_g432650_i0 PRJNA315399 433098 158 3.429752 5.41900816 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 70.1 2.32e-13   NR MDO8659879.1 2762014 g432650 i0 86.1 1.36708860759494 36 5 68.4 0 144 37 123 158 MDO8659879.1 NYN domain-containing protein [Candidatus Parcubacteria bacterium] diamond 216 70.1 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32729647 32729647 PRJNA315399_P_NODE_472420_length_154_cov_1.837607_g471972_i0 PRJNA315399 472420 154 1.837607 2.82991478 Candidatus Parcubacteria bacterium 2762014 Bacteria Bacteria 75.5 5.59e-15   NR MEN9920244.1 2762014 g471972 i0 81.8 3.42857142857143 44 8 85.7 0 143 12 10 53 MEN9920244.1 hypothetical protein [Candidatus Parcubacteria bacterium] diamond 528 75.5 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Candidatus Parcubacteria bacterium
32855403 32855403 PRJNA315399_P_NODE_223320_length_183_cov_6.082192_g222872_i0 PRJNA315399 223320 183 6.082192 11.13041136 Parcubacteria bacterium OLB19 1617425 Bacteria Bacteria 42.7 0.0173   NR KXJ99149.1 1617425 g222872 i0 74.1 0.442622950819672 27 7 44.3 0 100 180 497 523 KXJ99149.1 MAG: putative peptidoglycan biosynthesis protein MurJ [Parcubacteria bacterium OLB19] diamond 81 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Parcubacteria         Parcubacteria bacterium OLB19

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;