RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA315399" and tax_phylum = "Candidatus Nealsoniibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Nealsoniibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA315399 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28102440 28102440 PRJNA315399_S_NODE_50405_length_214_cov_4.638418_g50204_i0 PRJNA315399 50405 214 4.638418 9.92621452 root 1 Root_unresolved Root_unresolved 48.1 5.92e-5   NR MCX6760708.1 2093793 g50204 i0 57.5 1.2196261682243 40 17 56.1 0 189 70 64 103 MCX6760708.1 hypothetical protein [Candidatus Nealsonbacteria bacterium] diamond 261 48.1 1 Bacteria Bacteria candidate phyla   Candidatus Nealsoniibacteriota         Candidatus Nealsonbacteria bacterium
29916600 29916600 PRJNA315399_P_NODE_368291_length_165_cov_15.937500_g367843_i0 PRJNA315399 368291 165 15.9375 26.296875 Candidatus Nealsonbacteria bacterium CG23_combo_of_CG 2093793 Bacteria Bacteria 67 4.3e-12   NR PIP24804.1 1974718 g367843 i0 57.9 1.03636363636364 57 19 94.5 2 5 160 59 115 PIP24804.1 MAG: hypothetical protein COX34_02160, partial [Candidatus Nealsonbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_36_12] diamond 171 67 1 Bacteria Bacteria candidate phyla   Candidatus Nealsoniibacteriota         Candidatus Nealsonbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_36_12
31387642 31387642 PRJNA315399_P_NODE_437196_length_157_cov_9.258333_g436748_i0 PRJNA315399 437196 157 9.258333 14.53558281 Bacillati 1783272 Bacteria Bacteria 79.3 2.53e-17   NR PIV45114.1 1974699 g436748 i0 88.6 4.20382165605096 44 5 84.1 0 142 11 34 77 PIV45114.1 MAG: hypothetical protein COS25_01520 [Candidatus Nealsonbacteria bacterium CG02_land_8_20_14_3_00_37_10] diamond 660 79.7 0.994981179422836 Bacteria Bacteria candidate phyla   Candidatus Nealsoniibacteriota         Candidatus Nealsonbacteria bacterium CG02_land_8_20_14_3_00_37_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;