RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA315399" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA315399 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27264222 27264222 PRJNA315399_S_NODE_86523_length_185_cov_5.689189_g86322_i0 PRJNA315399 86523 185 5.689189 10.52499965 Plasmodium sp. gorilla clade G3 880536 SAR_Eukaryotes SAR_Eukaryotes 42 0.0334   NR SOV81029.1 880536 g86322 i0 41.2 0.827027027027027 51 30 82.7 0 170 18 3187 3237 SOV81029.1 conserved Plasmodium protein, unknown function [Plasmodium sp. gorilla clade G3] diamond 153 42 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G3
32494889 32494889 PRJNA315399_P_NODE_204699_length_184_cov_8.625850_g204251_i0 PRJNA315399 204699 184 8.62585 15.871564 Eimeria 5800 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.00903   NR XP_013334409.1 5804 g204251 i0 59.3 5.55978260869565 27 11 44 0 5 85 228 254 XP_013334409.1 sedoheptulose-1,7 bisphosphatase, putative [Eimeria maxima] diamond 1023 43.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
32841303 32841303 PRJNA315399_P_NODE_185820_length_186_cov_2.362416_g185372_i0 PRJNA315399 185820 186 2.362416 4.39409376 root 1 Root_unresolved Root_unresolved 43.9 0.00719   NR XP_028533978.1 85471 g185372 i0 46.2 1.5 39 21 62.9 0 31 147 166 204 XP_028533978.1 conserved Plasmodium protein, unknown function [Plasmodium relictum] diamond 279 44.3 0.99097065462754 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;