RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA315399" and tax_kingdom = "Shotokuvirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Shotokuvirae · 3 ✖

bioproject 1

  • PRJNA315399 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26599334 26599334 PRJNA315399_S_NODE_98341_length_179_cov_4.436620_g98140_i0 PRJNA315399 98341 179 4.43662 7.9415498 Cressdnaviricota sp. 2748378 Viruses Viruses 57.4 7.17e-8   NR AXH73952.1 2748378 g98140 i0 50 0.871508379888268 52 25 85.5 1 167 15 103 154 AXH73952.1 MAG: putative capsid protein [Cressdnaviricota sp.] diamond 156 57.4 1 Viruses   Shotokuvirae Cressdnaviricota         Cressdnaviricota sp.
27895648 27895648 PRJNA315399_S_NODE_4685_length_449_cov_42.694175_g4494_i0 PRJNA315399 4685 449 42.694175 191.69684575 Po-Circo-like virus 1454552 Viruses Viruses 49.3 6.33e-4   NR QYM90084.1 1454552 g4494 i0 37.3 0.501113585746102 75 43 47.4 2 318 106 80 154 QYM90084.1 hypothetical protein [Po-Circo-like virus] diamond 225 49.3 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Rohanvirales Kirkoviridae Aglavirus Aglavirus caranthi
29821437 29821437 PRJNA315399_P_NODE_403671_length_161_cov_4.080645_g403223_i0 PRJNA315399 403671 161 4.080645 6.56983845 Papillomavirus homo7299 3116969 Viruses Viruses 52.8 3.53e-6   NR DBA51342.1 3116969 g403223 i0 87.5 0.894409937888199 24 3 44.7 0 145 74 269 292 DBA51342.1 MAG TPA_asm: E1 [Papillomavirus homo7299] diamond 144 52.8 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Papillomavirus homo7299

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;