RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA315399" and tax_clade = "Metamonada"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA315399 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29916577 29916577 PRJNA315399_P_NODE_174351_length_186_cov_10.979866_g173903_i0 PRJNA315399 174351 186 10.979866 20.42255076 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 44.7 0.00359   NR KAG9396486.1 201153 g173903 i0 52.2 0.741935483870968 46 21 74.2 1 148 11 422 466 KAG9396486.1 Aspartyl protease [Carpediemonas membranifera] diamond 138 44.7 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
30832738 30832738 PRJNA315399_S_NODE_28874_length_251_cov_2.668224_g28673_i0 PRJNA315399 28874 251 2.668224 6.69724224 Anaeramoeba flamelloides 1746091 Root_unresolved Root_unresolved 42.7 0.0427   NR KAJ3436526.1 1746091 g28673 i0 36.5 0.621513944223108 52 33 62.2 0 46 201 1857 1908 KAJ3436526.1 hypothetical protein M0812_18584 [Anaeramoeba flamelloides] diamond 156 42.7 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba flamelloides
31116858 31116858 PRJNA315399_S_NODE_171955_length_155_cov_5.661017_g171754_i0 PRJNA315399 171955 155 5.661017 8.77457635 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 48.1 1.4e-4   NR KAJ5074328.1 1746090 g171754 i0 69 0.561290322580645 29 9 56.1 0 130 44 956 984 KAJ5074328.1 intein-containing e3 ubiquitin-protein ligase ari5-related precursor [Anaeramoeba ignava] diamond 87 48.1 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;