RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA315314" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315314 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27042734 27042734 PRJNA315314_S_NODE_28542_length_158_cov_2.271318_g28221_i0 PRJNA315314 28542 158 2.271318 3.58868244 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 45.1 0.00148   NR MEY3851192.1 2026799 g28221 i0 73.1 0.493670886075949 26 7 49.4 0 9 86 187 212 MEY3851192.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 78 45.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27281619 27281619 PRJNA315314_S_NODE_10403_length_251_cov_4.333333_g10082_i0 PRJNA315314 10403 251 4.333333 10.87666583 Opitutia 414999 Bacteria Bacteria 69.3 5.11e-13   NR MBE6411830.1 2026772 g10082 i0 55.9 3.44223107569721 59 25 69.3 1 176 3 1 59 MBE6411830.1 ribosome-associated translation inhibitor RaiA [Opitutales bacterium] diamond 864 69.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
28102406 28102406 PRJNA315314_S_NODE_14405_length_215_cov_6.946237_g14084_i0 PRJNA315314 14405 215 6.946237 14.93440955 Pseudomonadati 3379134 Bacteria Bacteria 75.1 7.83e-16   NR MBV9999945.1 2026799 g14084 i0 60 1.75813953488372 60 23 83.7 1 36 215 14 72 MBV9999945.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 378 75.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29127242 29127242 PRJNA315314_S_NODE_20089_length_184_cov_5.883871_g19768_i0 PRJNA315314 20089 184 5.883871 10.82632264 Opitutaceae bacterium 2006848 Bacteria Bacteria 66.2 5.47e-12   NR MEO6245957.1 2006848 g19768 i0 62.2 2.23369565217391 45 17 73.4 0 180 46 84 128 MEO6245957.1 ribosome-associated translation inhibitor RaiA [Opitutaceae bacterium] diamond 411 66.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29979522 29979522 PRJNA315314_S_NODE_11511_length_239_cov_3.771429_g11190_i0 PRJNA315314 11511 239 3.771429 9.01371531 Opitutales bacterium ASA1 3081749 Bacteria Bacteria 55.8 1.32e-7   NR BET69689.1 3081749 g11190 i0 49.3 0.841004184100418 67 33 82.8 1 237 40 28 94 BET69689.1 hypothetical protein ASA1KI_46070 [Opitutales bacterium ASA1] diamond 201 55.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Alterococcaceae Congregicoccus Congregicoccus parvus
31211305 31211305 PRJNA315314_S_NODE_17635_length_196_cov_2.712575_g17314_i0 PRJNA315314 17635 196 2.712575 5.316647 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 102 1.2699999999999999e-23   NR MED5453097.1 2026799 g17314 i0 73.8 1.98979591836735 65 15 99.5 1 1 195 166 228 MED5453097.1 tyrosine--tRNA ligase [Verrucomicrobiota bacterium] diamond 390 102 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;