RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA315314" and tax_phylum = "Nitrososphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrososphaerota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA315314 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27579782 27579782 PRJNA315314_S_NODE_21664_length_178_cov_3.268456_g21343_i0 PRJNA315314 21664 178 3.268456 5.81785168 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 91.7 1.63e-22   NR MFL6321927.1 2169593 g21343 i0 82.1 2.8988764044943802 56 10 94.4 0 177 10 32 87 MFL6321927.1 30S ribosomal protein S16 [Nitrososphaeraceae archaeon] diamond 516 91.7 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
28022054 28022054 PRJNA315314_S_NODE_20505_length_183_cov_1.480519_g20184_i0 PRJNA315314 20505 183 1.480519 2.70934977 Nitrososphaerota archaeon 2026795 Archaea Archaea 42.4 0.023   NR MDG6926551.1 2026795 g20184 i0 42.6 0.885245901639344 54 29 88.5 1 6 167 892 943 MDG6926551.1 leucine--tRNA ligase [Nitrososphaerota archaeon] diamond 162 42.4 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
31148170 31148170 PRJNA315314_S_NODE_8415_length_279_cov_2.844000_g8094_i0 PRJNA315314 8415 279 2.844 7.93476 Nitrosarchaeum sp. 2026886 Archaea Archaea 128 4.2099999999999997e-32   NR MFB5612793.1 2026886 g8094 i0 70.7 0.989247311827957 92 27 98.9 0 278 3 506 597 MFB5612793.1 molecular chaperone DnaK [Nitrosarchaeum sp.] diamond 276 128 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;