RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA315314" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 12 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315314 · 12 ✖

analysis 1

  • diamond · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21467151 21467151 PRJNA315314_S_NODE_5057_length_357_cov_4.939024_g4736_i0 PRJNA315314 5057 357 4.939024 17.63231568 Opisthokonta 33154 Nematoda Nematoda 124 1.21e-33   NR KHN76789.1 6265 g4736 i0 59.6 11.8067226890756 94 38 79 0 356 75 42 135 KHN76789.1 40S ribosomal protein S15 [Toxocara canis] diamond 4215 125 0.992 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
26599211 26599211 PRJNA315314_S_NODE_26981_length_162_cov_2.045113_g26660_i0 PRJNA315314 26981 162 2.045113 3.31308306 Soboliphyme baturini 241478 Nematoda Nematoda 82 1.07e-18   NR VDP36307.1 241478 g26660 i0 64.2 2.94444444444444 53 19 98.1 0 2 160 10 62 VDP36307.1 unnamed protein product [Soboliphyme baturini] diamond 477 82 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
26853097 26853097 PRJNA315314_S_NODE_25241_length_167_cov_1.456522_g24920_i0 PRJNA315314 25241 167 1.456522 2.43239174 Heligmosomoides polygyrus 6339 Nematoda Nematoda 60.5 6.37e-9   NR VDO70226.1 6339 g24920 i0 61.9 0.754491017964072 42 16 75.4 0 40 165 44 85 VDO70226.1 unnamed protein product [Heligmosomoides polygyrus] diamond 126 60.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heligmosomidae Heligmosomoides Heligmosomoides polygyrus
27264128 27264128 PRJNA315314_S_NODE_6063_length_328_cov_3.046823_g5742_i0 PRJNA315314 6063 328 3.046823 9.99357944 Necator americanus 51031 Nematoda Nematoda 97.8 1.1200000000000001e-22   NR ETN79618.1 51031 g5742 i0 84.5 0.530487804878049 58 7 53 1 154 327 1 56 ETN79618.1 firmicute plasmid replication protein [Necator americanus] diamond 174 97.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
27674787 27674787 PRJNA315314_S_NODE_11524_length_239_cov_2.957143_g11203_i0 PRJNA315314 11524 239 2.957143 7.06757177 Heterodera trifolii 157864 Nematoda Nematoda 72 1.67e-12   NR KAL3093637.1 157864 g11203 i0 64.3 2.14644351464435 56 20 70.3 0 237 70 429 484 KAL3093637.1 hypothetical protein niasHT_026675 [Heterodera trifolii] diamond 513 72 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera trifolii
28576109 28576109 PRJNA315314_S_NODE_15467_length_208_cov_3.452514_g15146_i0 PRJNA315314 15467 208 3.452514 7.18122912 Metazoa 33208 Nematoda Nematoda 52 7.87e-7   NR VDK89132.1 42156 g15146 i0 50 2.33653846153846 54 26 77.9 1 198 37 1 53 VDK89132.1 unnamed protein product, partial [Litomosoides sigmodontis] diamond 486 52 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Litomosoides Litomosoides sigmodontis
29537396 29537396 PRJNA315314_S_NODE_16690_length_201_cov_2.767442_g16369_i0 PRJNA315314 16690 201 2.767442 5.56255842 Enterobius vermicularis 51028 Nematoda Nematoda 55.1 9.96e-7   NR VDD96011.1 51028 g16369 i0 41.8 1.17910447761194 79 34 100 3 201 1 581 659 VDD96011.1 unnamed protein product, partial [Enterobius vermicularis] diamond 237 55.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
30250055 30250055 PRJNA315314_S_NODE_18472_length_192_cov_1.797546_g18151_i0 PRJNA315314 18472 192 1.797546 3.45128832 Opisthokonta 33154 Nematoda Nematoda 71.2 1.49e-12   NR VDK42925.1 6269 g18151 i0 61.9 20.9375 63 23 96.9 1 187 2 1 63 VDK42925.1 unnamed protein product [Anisakis simplex] diamond 4020 71.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anisakidae Anisakis Anisakis simplex
30832634 30832634 PRJNA315314_S_NODE_9694_length_260_cov_3.541126_g9373_i0 PRJNA315314 9694 260 3.541126 9.2069276 Necator americanus 51031 Nematoda Nematoda 150 7.05e-44   NR ETN79618.1 51031 g9373 i0 87.2 1.98461538461538 86 11 99.2 0 260 3 51 136 ETN79618.1 firmicute plasmid replication protein [Necator americanus] diamond 516 150 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
31148162 31148162 PRJNA315314_S_NODE_27275_length_161_cov_2.946970_g26954_i0 PRJNA315314 27275 161 2.94697 4.7446217 Auanema sp. JU1783 2878363 Nematoda Nematoda 48.5 1.02e-4   NR CAI4224279.1 2878363 g26954 i0 68.4 0.708074534161491 38 9 67.1 2 110 3 21 57 CAI4224279.1 unnamed protein product [Auanema sp. JU1783] diamond 114 48.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Auanema Auanema sp. JU1783
31496654 31496654 PRJNA315314_S_NODE_17016_length_199_cov_4.129412_g16695_i0 PRJNA315314 17016 199 4.129412 8.21752988 Trichuris suis 68888 Nematoda Nematoda 59.3 2.69e-9   NR KFD55927.1 68888 g16695 i0 65.9 1.61306532663317 44 15 66.3 0 1 132 12 55 KFD55927.1 hypothetical protein M513_03051, partial [Trichuris suis] diamond 321 59.3 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
32368388 32368388 PRJNA315314_S_NODE_22319_length_176_cov_1.829932_g21998_i0 PRJNA315314 22319 176 1.829932 3.22068032 Metazoa 33208 Nematoda Nematoda 89.4 2.24e-19   NR XP_003106358.2 31234 g21998 i0 67.9 10.9261363636364 56 15 95.5 1 2 169 289 341 XP_003106358.2 hypothetical protein GCK72_020866 [Caenorhabditis remanei] diamond 1923 89.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;