RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA315314" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA315314 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30959107 30959107 PRJNA315314_S_NODE_2634_length_489_cov_3.800000_g2325_i0 PRJNA315314 2634 489 3.8 18.582 Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_5 2049428 Bacteria Bacteria 47 0.0145   NR PIQ09371.1 1974047 g2325 i0 42.9 0.300613496932515 49 26 30.1 2 489 343 669 715 PIQ09371.1 MAG: hypothetical protein COW71_06735 [Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20] diamond 147 47 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20
32273429 32273429 PRJNA315314_S_NODE_15858_length_206_cov_1.813559_g15537_i0 PRJNA315314 15858 206 1.813559 3.73593154 Pseudomonadati 3379134 Bacteria Bacteria 57.8 1.15e-7   NR PIQ09371.1 1974047 g15537 i0 43.7 3.21844660194175 71 35 96.1 2 5 202 685 755 PIQ09371.1 MAG: hypothetical protein COW71_06735 [Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20] diamond 663 57.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium CG18_big_fil_WC_8_21_14_2_50_31_20

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;