RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "diamond", bioproject = "PRJNA315314" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA315314 · 10 ✖

analysis 1

  • diamond · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1655769 1655769 PRJNA315314_S_NODE_342_length_1265_cov_13.385113_g246_i0 PRJNA315314 342 1265 13.385113 169.32167945 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 636 1.79e-220   NR XP_004337289.1 1257118 g246 i0 72.7 1.98260869565217 417 114 98.9 0 1265 15 423 839 XP_004337289.1 eukaryotic translation elongation factor 2, putative [Acanthamoeba castellanii str. Neff] diamond 2508 636 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
4207964 4207964 PRJNA315314_S_NODE_18764_length_190_cov_5.198758_g18443_i0 PRJNA315314 18764 190 5.198758 9.8776402 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 80.9 1.05e-16   NR XP_004337223.1 1257118 g18443 i0 79.5 0.694736842105263 44 9 69.5 0 132 1 72 115 XP_004337223.1 nucleoside diphosphate kinase 1, putative [Acanthamoeba castellanii str. Neff] diamond 132 80.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28102409 28102409 PRJNA315314_S_NODE_16645_length_201_cov_3.953488_g16324_i0 PRJNA315314 16645 201 3.953488 7.94651088 root 1 Root_unresolved Root_unresolved 49.3 1.53e-5   NR XP_004351526.1 1257118 g16324 i0 53.1 2.29850746268657 49 21 71.6 2 195 52 26 73 XP_004351526.1 selT/selW/selH selenoprotein domain containing protein [Acanthamoeba castellanii str. Neff] diamond 462 49.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28653423 28653423 PRJNA315314_S_NODE_20747_length_182_cov_1.771242_g20426_i0 PRJNA315314 20747 182 1.771242 3.22366044 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.1 2.36e-12   NR XP_004347761.1 1257118 g20426 i0 54.2 0.791208791208791 48 22 79.1 0 36 179 176 223 XP_004347761.1 iodothyronine deiodinase [Acanthamoeba castellanii str. Neff] diamond 144 70.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29190264 29190264 PRJNA315314_S_NODE_22969_length_174_cov_1.579310_g22648_i0 PRJNA315314 22969 174 1.57931 2.7479994 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 79 2.6e-15   NR XP_004341555.1 1257118 g22648 i0 69 1 58 18 100 0 174 1 39 96 XP_004341555.1 coatomer subunit gamma, putative [Acanthamoeba castellanii str. Neff] diamond 174 79 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29442498 29442498 PRJNA315314_S_NODE_27050_length_162_cov_1.661654_g26729_i0 PRJNA315314 27050 162 1.661654 2.69187948 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 69.3 5.33e-12   NR XP_004358299.1 1257118 g26729 i0 55.8 0.962962962962963 52 23 96.3 0 162 7 175 226 XP_004358299.1 signal recognition particle 68 kDa protein [Acanthamoeba castellanii str. Neff] diamond 156 69.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32509123 32509123 PRJNA315314_S_NODE_28539_length_158_cov_2.271318_g28218_i0 PRJNA315314 28539 158 2.271318 3.58868244 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.9 9.87e-13   NR XP_004337914.1 1257118 g28218 i0 59.6 0.987341772151899 52 21 98.7 0 157 2 238 289 XP_004337914.1 COP9 signalosome complex subunit 3 (Signalosome subunit 3), putative [Acanthamoeba castellanii str. Neff] diamond 156 70.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32572320 32572320 PRJNA315314_S_NODE_30819_length_153_cov_2.846774_g30498_i0 PRJNA315314 30819 153 2.846774 4.35556422 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 49.3 5.42e-5   NR XP_004342569.1 1257118 g30498 i0 40.8 0.96078431372549 49 29 96.1 0 1 147 219 267 XP_004342569.1 fatty acid desaturase subfamily protein [Acanthamoeba castellanii str. Neff] diamond 147 49.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32603592 32603592 PRJNA315314_S_NODE_23000_length_174_cov_1.268966_g22679_i0 PRJNA315314 23000 174 1.268966 2.20800084 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 69.3 5.39e-12   NR XP_004340695.1 1257118 g22679 i0 54.9 0.879310344827586 51 23 87.9 0 153 1 69 119 XP_004340695.1 uncharacterized protein ACA1_392980 [Acanthamoeba castellanii str. Neff] diamond 153 69.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32792249 32792249 PRJNA315314_S_NODE_30900_length_153_cov_2.225806_g30579_i0 PRJNA315314 30900 153 2.225806 3.40548318 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 69.7 3.28e-12   NR XP_004333431.1 1257118 g30579 i0 56.3 0.941176470588235 48 21 94.1 0 6 149 656 703 XP_004333431.1 cytochrome b5 domain containing protein [Acanthamoeba castellanii str. Neff] diamond 144 69.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;