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contig_metadata

28 rows where analysis = "diamond", bioproject = "PRJNA315314" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 28 ✖

tax_kingdom 1

bioproject 1

  • PRJNA315314 · 28 ✖

analysis 1

  • diamond · 28 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1655477 1655477 PRJNA315314_S_NODE_14262_length_216_cov_4.732620_g13941_i0 PRJNA315314 14262 216 4.73262 10.2224592 Agreia sp. PsM1 1872416 Bacteria Bacteria 141 3.08e-42   NR WP_367316755.1 3030533 g13941 i0 97.1 0.958333333333333 69 2 95.8 0 8 214 1 69 WP_367316755.1 transposase domain-containing protein, partial [Agreia sp. PsM10] diamond 207 141 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agreia Agreia sp. PsM10
8033983 8033983 PRJNA315314_S_NODE_15727_length_206_cov_33.084746_g15406_i0 PRJNA315314 15727 206 33.084746 68.15457676 Eggerthellaceae bacterium 1972561 Bacteria Bacteria 79.3 2.91e-15   NR MBQ9000606.1 1972561 g15406 i0 75 16.7766990291262 52 13 75.7 0 40 195 532 583 MBQ9000606.1 ATP-dependent zinc metalloprotease FtsH [Eggerthellaceae bacterium] diamond 3456 79.3 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae   Eggerthellaceae bacterium
11859304 11859304 PRJNA315314_S_NODE_1110_length_724_cov_11.595683_g542_i2 PRJNA315314 1110 724 11.595683 83.95274492 Actinopolymorphaceae bacterium 2952879 Bacteria Bacteria 183 1.3499999999999998e-54   NR HEY6739884.1 2952879 g542 i2 72 2.52762430939227 125 35 51.8 0 427 53 43 167 HEY6739884.1 hypothetical protein [Actinopolymorphaceae bacterium] diamond 1830 183 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Actinopolymorphaceae   Actinopolymorphaceae bacterium
13134453 13134453 PRJNA315314_S_NODE_1671_length_601_cov_10.638112_g542_i3 PRJNA315314 1671 601 10.638112 63.93505312 Actinopolymorphaceae bacterium 2952879 Bacteria Bacteria 183 2.2499999999999995e-55   NR HEY6739884.1 2952879 g542 i3 72 2.43594009983361 125 35 62.4 0 427 53 43 167 HEY6739884.1 hypothetical protein [Actinopolymorphaceae bacterium] diamond 1464 183 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Actinopolymorphaceae   Actinopolymorphaceae bacterium
16367911 16367911 PRJNA315314_S_NODE_31553_length_152_cov_1.634146_g31232_i0 PRJNA315314 31553 152 1.634146 2.48390192 Actinomycetota bacterium 2900548 Bacteria Bacteria 75.9 6.25e-15   NR MBM3679877.1 2900548 g31232 i0 68 6.84868421052632 50 16 98.7 0 151 2 158 207 MBM3679877.1 triose-phosphate isomerase [Actinomycetota bacterium] diamond 1041 75.9 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
22057109 22057109 PRJNA315314_S_NODE_10598_length_249_cov_3.122727_g10277_i0 PRJNA315314 10598 249 3.122727 7.77559023 FCB group 1783270 Bacteria Bacteria 175 3.5e-54   NR WP_344397633.1 114695 g10277 i0 100 3 83 0 100 0 249 1 65 147 WP_344397633.1 hypothetical protein, partial [Streptomyces asiaticus] diamond 747 175 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces asiaticus
22057349 22057349 PRJNA315314_S_NODE_24238_length_170_cov_1.617021_g23917_i0 PRJNA315314 24238 170 1.617021 2.7489357 Bacillati 1783272 Bacteria Bacteria 83.6 4.12e-19   NR WP_342455258.1 29539 g23917 i0 63 8.7 54 20 95.3 0 163 2 18 71 WP_342455258.1 thioredoxin [Thermoleophilum album] diamond 1479 83.6 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Thermoleophilales Thermoleophilaceae Thermoleophilum Thermoleophilum album
27010984 27010984 PRJNA315314_S_NODE_27782_length_160_cov_1.938931_g27461_i0 PRJNA315314 27782 160 1.938931 3.1022896 Actinomycetota bacterium 2900548 Bacteria Bacteria 90.5 7.27e-20   NR MDQ2761917.1 2900548 g27461 i0 73.1 0.975 52 14 97.5 0 158 3 30 81 MDQ2761917.1 phage/plasmid replication protein, II/X family [Actinomycetota bacterium] diamond 156 90.5 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
27105799 27105799 PRJNA315314_S_NODE_9162_length_267_cov_10.336134_g8841_i0 PRJNA315314 9162 267 10.336134 27.59747778 Mycolicibacter sinensis 875328 Bacteria Bacteria 42.7 0.0497   NR WP_064856798.1 875328 g8841 i0 37 0.820224719101124 73 44 79.8 1 243 31 299 371 WP_064856798.1 PPE domain-containing protein [Mycolicibacter sinensis] diamond 219 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacter Mycolicibacter sinensis
27422215 27422215 PRJNA315314_S_NODE_29883_length_155_cov_2.484127_g29562_i0 PRJNA315314 29883 155 2.484127 3.85039685 Micromonospora siamensis 299152 Bacteria Bacteria 61.6 1.92e-9   NR SCG34687.1 299152 g29562 i0 60.8 2.74838709677419 51 20 98.7 0 3 155 218 268 SCG34687.1 Subtilase family protein [Micromonospora siamensis] diamond 426 61.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora siamensis
28053366 28053366 PRJNA315314_S_NODE_18425_length_192_cov_2.723926_g18104_i0 PRJNA315314 18425 192 2.723926 5.22993792 Actinomycetota bacterium 2900548 Bacteria Bacteria 43.5 0.00886   NR MCX6403818.1 2900548 g18104 i0 41.1 0.875 56 33 87.5 0 19 186 81 136 MCX6403818.1 hypothetical protein [Actinomycetota bacterium] diamond 168 43.5 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28748084 28748084 PRJNA315314_S_NODE_22007_length_177_cov_2.317568_g21686_i0 PRJNA315314 22007 177 2.317568 4.10209536 Arthrobacter alpinus 656366 Bacteria Bacteria 43.1 0.00308   NR WP_239437099.1 656366 g21686 i0 39.6 1.6271186440678 48 27 78 1 158 21 50 97 WP_239437099.1 hypothetical protein [Arthrobacter alpinus] diamond 288 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter alpinus
28779535 28779535 PRJNA315314_S_NODE_2367_length_514_cov_3.090722_g2068_i0 PRJNA315314 2367 514 3.090722 15.88631108 Paractinoplanes lichenicola 2802976 Bacteria Bacteria 77 7.04e-14   NR WP_307834430.1 2802976 g2068 i0 36.6 1.64007782101167 142 85 81.7 3 421 2 36 174 WP_307834430.1 LURP-one-related/scramblase family protein [Paractinoplanes lichenicola] diamond 843 77 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Paractinoplanes Paractinoplanes lichenicola
28860213 28860213 PRJNA315314_S_NODE_20148_length_184_cov_3.000000_g19827_i0 PRJNA315314 20148 184 3 5.52 Bacillati 1783272 Bacteria Bacteria 58.9 9.87e-9   NR WP_028643519.1 1380392 g19827 i0 52.5 2.90217391304348 61 26 99.5 1 184 2 102 159 WP_028643519.1 LURP-one-related/scramblase family protein [Nocardioides sp. URHA0020] diamond 534 58.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides sp. URHA0020
29302354 29302354 PRJNA315314_S_NODE_14629_length_214_cov_1.075676_g14308_i0 PRJNA315314 14629 214 1.075676 2.30194664 Curtobacterium 2034 Bacteria Bacteria 63.2 1.56e-9   NR WP_065958989.1 1885315 g14308 i0 52.5 4.06542056074766 59 28 82.7 0 1 177 337 395 WP_065958989.1 toxic anion resistance protein [Curtobacterium sp. UCD-KPL2560] diamond 870 63.5 0.995275590551181 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Curtobacterium Curtobacterium sp. UCD-KPL2560
29916537 29916537 PRJNA315314_S_NODE_18491_length_192_cov_1.411043_g18170_i0 PRJNA315314 18491 192 1.411043 2.70920256 Streptomyces sp. NPDC 1931 Bacteria Bacteria 47.4 3.92e-4   NR WP_389374795.1 3364656 g18170 i0 53.5 0.671875 43 20 67.2 0 148 20 194 236 WP_389374795.1 transposase family protein [Streptomyces sp. NPDC002659] diamond 129 47.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC002659
30453750 30453750 PRJNA315314_S_NODE_5813_length_334_cov_7.468852_g5492_i0 PRJNA315314 5813 334 7.468852 24.94596568 Thermoleophilaceae bacterium 2732252 Bacteria Bacteria 111 1.01e-25   NR HEX8647503.1 2732252 g5492 i0 50.9 2.75748502994012 106 38 82.6 2 16 291 607 712 HEX8647503.1 N-acetylmuramoyl-L-alanine amidase [Thermoleophilaceae bacterium] diamond 921 111 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Thermoleophilales Thermoleophilaceae   Thermoleophilaceae bacterium
30674569 30674569 PRJNA315314_S_NODE_3433_length_431_cov_3.825871_g3113_i0 PRJNA315314 3433 431 3.825871 16.48950401 Actinomycetota bacterium 2900548 Bacteria Bacteria 84 8.6e-16   NR MEP6904043.1 2900548 g3113 i0 41.7 1.86542923433875 139 68 92.6 4 430 32 56 187 MEP6904043.1 pesticin C-terminus-like muramidase [Actinomycetota bacterium] diamond 804 84 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30832593 30832593 PRJNA315314_S_NODE_17114_length_199_cov_1.688235_g16793_i0 PRJNA315314 17114 199 1.688235 3.35958765 Streptomyces sp. NPDC 1931 Bacteria Bacteria 77 1.59e-15   NR WP_358619153.1 3154466 g16793 i0 55.6 1.89949748743719 63 28 95 0 3 191 131 193 WP_358619153.1 TerD family protein [Streptomyces sp. NPDC005962] diamond 378 77 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC005962
30864135 30864135 PRJNA315314_S_NODE_8254_length_281_cov_4.023810_g7933_i0 PRJNA315314 8254 281 4.02381 11.3069061 Gaiellaceae bacterium 2838783 Bacteria Bacteria 55.8 9.72e-7   NR HLE99792.1 2838783 g7933 i0 39.2 0.790035587188612 74 42 75.8 1 232 20 42 115 HLE99792.1 hypothetical protein [Gaiellaceae bacterium] diamond 222 55.8 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae   Gaiellaceae bacterium
30990743 30990743 PRJNA315314_S_NODE_11614_length_238_cov_4.210526_g11293_i0 PRJNA315314 11614 238 4.210526 10.02105188 Actinomycetota bacterium 2900548 Bacteria Bacteria 123 9.45e-32   NR MDQ2761917.1 2900548 g11293 i0 77.3 0.945378151260504 75 17 94.5 0 3 227 260 334 MDQ2761917.1 phage/plasmid replication protein, II/X family [Actinomycetota bacterium] diamond 225 123 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31085440 31085440 PRJNA315314_S_NODE_28495_length_158_cov_2.604651_g28174_i0 PRJNA315314 28495 158 2.604651 4.11534858 Microbispora oryzae 2806554 Bacteria Bacteria 62.4 1.35e-9   NR WP_210155365.1 2806554 g28174 i0 63.8 1.87974683544304 47 17 89.2 0 2 142 361 407 WP_210155365.1 vWA domain-containing protein [Microbispora oryzae] diamond 297 62.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Microbispora Microbispora oryzae
31211323 31211323 PRJNA315314_S_NODE_5215_length_351_cov_8.040373_g4894_i0 PRJNA315314 5215 351 8.040373 28.22170923 Corynebacterium rouxii 2719119 Bacteria Bacteria 46.2 0.00366   NR VZH86393.1 2719119 g4894 i0 55.2 0.495726495726496 58 25 49.6 1 254 81 110 166 VZH86393.1 hypothetical protein FRC0190_02303 [Corynebacterium rouxii] diamond 174 46.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium rouxii
31608872 31608872 PRJNA315314_S_NODE_26716_length_163_cov_1.029851_g26395_i0 PRJNA315314 26716 163 1.029851 1.67865713 Streptomyces 1883 Bacteria Bacteria 53.9 9.98e-7   NR WP_355982537.1 67280 g26395 i0 67.6 6.34969325153374 37 12 68.1 0 118 8 1 37 WP_355982537.1 formyltransferase family protein [Streptomyces bobili] diamond 1035 53.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces bobili
31749349 31749349 PRJNA315314_S_NODE_14757_length_213_cov_1.956522_g14436_i0 PRJNA315314 14757 213 1.956522 4.16739186 Mycolicibacterium sp. 2320850 Bacteria Bacteria 75.1 6.21e-15   NR WP_293358887.1 2320850 g14436 i0 49.3 0.971830985915493 69 34 95.8 1 7 210 65 133 WP_293358887.1 NUDIX domain-containing protein [Mycolicibacterium sp.] diamond 207 75.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium sp.
31780971 31780971 PRJNA315314_S_NODE_7917_length_287_cov_3.255814_g7596_i0 PRJNA315314 7917 287 3.255814 9.34418618 Actinomycetota bacterium 2900548 Bacteria Bacteria 100 5.51e-23   NR MDQ2761917.1 2900548 g7596 i0 53.6 1.01393728222997 97 43 99.3 1 286 2 170 266 MDQ2761917.1 phage/plasmid replication protein, II/X family [Actinomycetota bacterium] diamond 291 100 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
31970883 31970883 PRJNA315314_S_NODE_20578_length_182_cov_6.163399_g20257_i0 PRJNA315314 20578 182 6.163399 11.21738618 Actinomycetota bacterium 2900548 Bacteria Bacteria 50.8 2.24e-5   NR MDQ2761917.1 2900548 g20257 i0 72.4 0.478021978021978 29 8 47.8 0 3 89 327 355 MDQ2761917.1 phage/plasmid replication protein, II/X family [Actinomycetota bacterium] diamond 87 50.8 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32603611 32603611 PRJNA315314_S_NODE_6180_length_325_cov_3.949324_g5859_i0 PRJNA315314 6180 325 3.949324 12.835303 Microbacterium endophyticum 1526412 Bacteria Bacteria 59.3 1.6e-7   NR WP_165140388.1 1526412 g5859 i0 41.5 1.97538461538462 106 53 97.8 3 322 5 4728 4824 WP_165140388.1 putative Ig domain-containing protein [Microbacterium endophyticum] diamond 642 59.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium endophyticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;