RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA315314" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA315314 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26947687 26947687 PRJNA315314_S_NODE_5982_length_330_cov_3.970100_g5661_i0 PRJNA315314 5982 330 3.9701 13.10133 Thermoplasmata archaeon 1906666 Archaea Archaea 46.6 4.39e-4   NR KAA0005595.1 1906666 g5661 i0 52.2 0.418181818181818 46 22 41.8 0 189 326 5 50 KAA0005595.1 MAG: hypothetical protein FE038_00070 [Thermoplasmata archaeon] diamond 138 46.6 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
28007989 28007989 PRJNA315314_S_NODE_13925_length_219_cov_1.552632_g13604_i0 PRJNA315314 13925 219 1.552632 3.40026408 Methanomicrobia 224756 Archaea Archaea 78.6 6.69e-15   NR HEX7444924.1 90426 g13604 i0 56.9 1.97260273972603 72 28 98.6 2 1 216 250 318 HEX7444924.1 phosphoenolpyruvate synthase [Methanothrix sp.] diamond 432 79.3 0.991172761664565 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
29979531 29979531 PRJNA315314_S_NODE_17971_length_194_cov_4.830303_g17650_i0 PRJNA315314 17971 194 4.830303 9.37078782 Methanosarcina sp. 2213 Archaea Archaea 55.8 6.12e-8   NR HET8687938.1 2213 g17650 i0 51.9 0.835051546391753 54 18 71.1 1 139 2 1 54 HET8687938.1 hypothetical protein [Methanosarcina sp.] diamond 162 55.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.
32697905 32697905 PRJNA315314_S_NODE_29080_length_157_cov_1.796875_g28759_i0 PRJNA315314 29080 157 1.796875 2.82109375 Methanosarcina sp. 2213 Archaea Archaea 41.6 0.03   NR HET8688948.1 2213 g28759 i0 42.5 0.764331210191083 40 23 76.4 0 2 121 107 146 HET8688948.1 RNA ligase family protein [Methanosarcina sp.] diamond 120 41.6 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Methanosarcinaceae Methanosarcina Methanosarcina sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;