RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA315314" and tax_kingdom = "Fusobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 8 ✖

bioproject 1

  • PRJNA315314 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20782282 20782282 PRJNA315314_S_NODE_18537_length_191_cov_6.018519_g18216_i0 PRJNA315314 18537 191 6.018519 11.49537129 Cetobacterium 180162 Bacteria Bacteria 122 2.16e-33   NR WP_023049584.1 180162 g18216 i0 96.8 0.989528795811518 63 2 99 0 191 3 42 104 WP_023049584.1 MULTISPECIES: ribosome hibernation-promoting factor, HPF/YfiA family [Cetobacterium] diamond 189 122 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
26821347 26821347 PRJNA315314_S_NODE_29481_length_156_cov_2.047244_g29160_i0 PRJNA315314 29481 156 2.047244 3.19370064 unclassified Cetobacterium 2630983 Bacteria Bacteria 95.5 2.2100000000000003e-21   NR WP_047383928.1 2630983 g29160 i0 100 0.980769230769231 51 0 98.1 0 3 155 339 389 WP_047383928.1 MULTISPECIES: pyruvate kinase PykF [unclassified Cetobacterium] diamond 153 95.5 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
26916136 26916136 PRJNA315314_S_NODE_25782_length_165_cov_2.823529_g25461_i0 PRJNA315314 25782 165 2.823529 4.65882285 unclassified Cetobacterium 2630983 Bacteria Bacteria 100 1.7e-25   NR WP_047382791.1 2630983 g25461 i0 100 0.981818181818182 54 0 98.2 0 2 163 29 82 WP_047382791.1 MULTISPECIES: hypothetical protein [unclassified Cetobacterium] diamond 162 100 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
27010963 27010963 PRJNA315314_S_NODE_12922_length_226_cov_9.578680_g12601_i0 PRJNA315314 12922 226 9.57868 21.6478168 Cetobacterium sp. 2071632 Bacteria Bacteria 123 8.019999999999999e-34   NR WP_291944692.1 2071632 g12601 i0 98.5 0.86283185840708 65 1 86.3 0 225 31 106 170 WP_291944692.1 hypothetical protein [Cetobacterium sp.] diamond 195 123 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp.
28432396 28432396 PRJNA315314_S_NODE_2606_length_491_cov_12.216450_g2297_i0 PRJNA315314 2606 491 12.21645 59.9827695 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 266 6.68e-89   NR WP_294095876.1 527638 g2297 i0 90 0.916496945010183 150 14 91.6 1 491 42 20 168 WP_294095876.1 hypothetical protein [uncultured Cetobacterium sp.] diamond 450 266 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
32002600 32002600 PRJNA315314_S_NODE_19398_length_187_cov_5.702532_g19077_i0 PRJNA315314 19398 187 5.702532 10.66373484 Cetobacterium 180162 Bacteria Bacteria 120 1.88e-34   NR WP_291941138.1 180162 g19077 i0 90.6 0.850267379679144 53 5 85 0 5 163 1 53 WP_291941138.1 MULTISPECIES: rubredoxin [Cetobacterium] diamond 159 120 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
32603595 32603595 PRJNA315314_S_NODE_25720_length_165_cov_3.985294_g25399_i0 PRJNA315314 25720 165 3.985294 6.5757351 Cetobacterium 180162 Bacteria Bacteria 94.4 3.2899999999999996e-23   NR WP_023051506.1 180162 g25399 i0 95.9 0.890909090909091 49 2 89.1 0 1 147 76 124 WP_023051506.1 MULTISPECIES: Fe-S cluster assembly scaffold protein NifU [Cetobacterium] diamond 147 94.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
32824027 32824027 PRJNA315314_S_NODE_31420_length_152_cov_2.203252_g31099_i0 PRJNA315314 31420 152 2.203252 3.34894304 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 103 5.94e-25   NR WP_293723194.1 527638 g31099 i0 98 0.986842105263158 50 1 98.7 0 151 2 244 293 WP_293723194.1 hypothetical protein [uncultured Cetobacterium sp.] diamond 150 103 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;