RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA314497" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA314497 · 1 ✖

analysis 1

  • diamond · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23332624 23332624 PRJNA314497_P_NODE_1199_length_512_cov_2.198758_g1061_i0 PRJNA314497 1199 512 2.198758 11.25764096 Bacteroidota bacterium 1898104 Bacteria Bacteria 367 1.28e-123   NR MBK6986222.1 1898104 g1061 i0 99.4 2.98828125 170 1 99.6 0 3 512 341 510 MBK6986222.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Bacteroidota bacterium] diamond 1530 367 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;